Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20856
(357 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 42 1e-04
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 37 0.006
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 31 0.21
SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032) 30 0.64
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_13297| Best HMM Match : RnaseH (HMM E-Value=0.37) 27 4.5
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19) 26 7.8
SB_34843| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_12409| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_1922| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 260 KFYKGXSYIILRTTSD-SRNNLSWDIHYWIGRE 355
KFY G SYIIL T D + L +D+H+WIG++
Sbjct: 887 KFYDGDSYIILNTYKDPEEDELKYDVHFWIGKD 919
Score = 40.3 bits (90), Expect = 4e-04
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 263 FYKGXSYIILRTTSDS-RNNLSWDIHYWIGRE 355
FY G SYIIL T +S + L +D+H+WIG++
Sbjct: 499 FYDGDSYIILNTYKESGEDELKYDVHFWIGKD 530
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 135 DKNA-RDKAKVHPAFANVGRTAGVQIWRIQ 221
+KN R+ A A+ N G G+QIWRI+
Sbjct: 455 EKNVKREAAATEIAWKNAGTREGLQIWRIE 484
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 260 KFYKGXSYIILRTTSDSRNN--LSWDIHYWIGR 352
+FY G SYIIL T + + L +D+H+WIGR
Sbjct: 543 QFYAGDSYIILWTYEEKEDTEKLCYDLHFWIGR 575
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 31.5 bits (68), Expect = 0.21
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 290 LRTTSDSRNNLSWDIHYWIGRE 355
L+T D + L W I+YWIG+E
Sbjct: 260 LKTELDETDQLFWQIYYWIGKE 281
>SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032)
Length = 675
Score = 29.9 bits (64), Expect = 0.64
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 135 DKNAR-DKAKVHPAFANVGRTAGVQIWRI 218
+KN + + A+ PA+ G+ GVQ+WRI
Sbjct: 347 EKNVKKESAEGEPAWEGAGKEVGVQVWRI 375
>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 73 PSGHGRRPSLXR*AGRSHRCQIKTPVTKPKSIRLLPMSAEQP 198
P+G ++PS +G+ + Q +TP++ KSI +P ++++P
Sbjct: 1317 PNGQLKQPSSIINSGQLQQLQYRTPISANKSI--IPQTSQEP 1356
>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 162 VHPA-FANVGRTAGVQIWRIQNXEPIPVAXKDXENST 269
+HPA FA V T + +W + + +P+A E+ T
Sbjct: 477 IHPALFATVDGTGRLDLWNLNSDTEVPIASTATESLT 513
>SB_13297| Best HMM Match : RnaseH (HMM E-Value=0.37)
Length = 393
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPRKTKRRHEK 41
C H+ TP L ++ +L ++ A S P+I + AV+ P +T R EK
Sbjct: 316 CDAHVATPPPLCQQQQSAPSLVVTPAEWSRRQKEDPVIQKVMHAVKTNKQPMQTTSREEK 375
>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
Length = 1828
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 78 WARTATKPXEISGPITSL 131
W RT T+P EI G IT +
Sbjct: 1800 WGRTKTEPFEIDGVITQV 1817
>SB_34843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 127 RCQIKTPVTKPKSIRLLPMSAEQPVCKYG 213
RC++ VTKP + + + +E CK G
Sbjct: 147 RCRLANKVTKPDADLQIRLQSEMQTCKQG 175
>SB_12409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 127 RCQIKTPVTKPKSIRLLPMSAEQPVCKYG 213
RC++ VTKP + + + +E CK G
Sbjct: 199 RCRLANKVTKPDADLQIRLQSEMQTCKQG 227
>SB_1922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 39 IFSCLLFVFLGSVWARTATKPXEISGPITSLSDKNARDKAKVHPAFANVGR 191
I SCL+ GS+ R + GPI + +HPA +VG+
Sbjct: 14 IMSCLMNRDYGSISKRCTHDTPIVDGPIVITNCSPLTIMVHLHPAIESVGQ 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,796
Number of Sequences: 59808
Number of extensions: 205804
Number of successful extensions: 627
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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