Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20856
         (357 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   4.5  
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    22   6.0  
AJ302661-1|CAC35526.1|  128|Anopheles gambiae gSG8 protein protein.    22   6.0  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 269  KGXSYIILRTTSDSRNN 319
            +G  ++ILRTT+D   N
Sbjct: 1049 QGNGHLILRTTNDQEGN 1065


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 170 GFCQCRQNSRCANMENTELXTNTRCSXG 253
           GF +  Q   C  ++ T   T T+C+ G
Sbjct: 63  GFVRETQFGNCVPVDTTYNPTTTKCAAG 90


>AJ302661-1|CAC35526.1|  128|Anopheles gambiae gSG8 protein protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 269 KGXSYIILRTTSDSRNNLSWDI 334
           +G  ++ LRT++ +R  L W I
Sbjct: 23  RGDPFVALRTSTTNRTLLCWAI 44


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,808
Number of Sequences: 2352
Number of extensions: 6146
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26224815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)