SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20856
         (357 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80184-1|AAC02796.1| 1269|Homo sapiens FLII protein.                   44   1e-04
U01184-1|AAC03568.1| 1268|Homo sapiens flightless-I homolog prot...    44   1e-04
BC025300-1|AAH25300.1| 1269|Homo sapiens flightless I homolog (D...    44   1e-04
AB208864-1|BAD92101.1| 1101|Homo sapiens flightless I homolog va...    44   1e-04
X04412-1|CAA28000.1|  782|Homo sapiens plasma gelsolin protein.        42   7e-04
BC026033-1|AAH26033.1|  782|Homo sapiens gelsolin (amyloidosis, ...    42   7e-04
AL513122-6|CAM20459.1|  731|Homo sapiens gelsolin (amyloidosis, ...    42   7e-04
AL513122-5|CAI14415.1|  260|Homo sapiens gelsolin (amyloidosis, ...    42   7e-04
AL513122-4|CAI14414.1|  228|Homo sapiens gelsolin (amyloidosis, ...    42   7e-04
AL513122-3|CAI14413.1|  782|Homo sapiens gelsolin (amyloidosis, ...    42   7e-04
X07066-1|CAA30102.1|   69|Homo sapiens protein ( Human gene for ...    40   0.003
BC075797-1|AAH75797.1|   85|Homo sapiens Unknown (protein for MG...    36   0.037
BC021090-1|AAH21090.1|  715|Homo sapiens SCIN protein protein.         36   0.037
AK075123-1|BAC11416.1|  715|Homo sapiens protein ( Homo sapiens ...    36   0.037
AF276507-1|AAK60494.1|  715|Homo sapiens scinderin protein.            36   0.037
AC005281-1|AAD15423.1|  527|Homo sapiens WUGSC:H_DJ0722F20.1 pro...    36   0.037
AB067492-1|BAB67798.1|  626|Homo sapiens KIAA1905 protein protein.     36   0.037
X12901-1|CAA31386.1|  827|Homo sapiens protein ( Human mRNA for ...    36   0.049
BC017303-1|AAH17303.1|  421|Homo sapiens VIL1 protein protein.         36   0.049
AK223398-1|BAD97118.1|  827|Homo sapiens villin 1 variant protein.     36   0.049
BC111730-1|AAI11731.1|  812|Homo sapiens AVIL protein protein.         34   0.11 
AF041449-1|AAC25051.1|  819|Homo sapiens advillin protein.             34   0.11 
CR456446-1|CAG30332.1|  824|Homo sapiens dJ1170K4.2 protein.           28   7.4  
BC039082-1|AAH39082.1|  461|Homo sapiens TMPRSS6 protein protein.      28   7.4  
AY358398-1|AAQ88764.1|  802|Homo sapiens PVAE354 protein.              28   7.4  
AY055384-1|AAL16414.1|  811|Homo sapiens type II transmembrane s...    28   7.4  
AY055383-1|AAL16413.1|  811|Homo sapiens type II transmembrane s...    28   7.4  
AL022314-2|CAI19335.1|  788|Homo sapiens protein ( (beta-1,4-)-g...    28   7.4  
AJ319876-1|CAC85953.1|  802|Homo sapiens matriptase-2 protein.         28   7.4  

>U80184-1|AAC02796.1| 1269|Homo sapiens FLII protein.
          Length = 1269

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           KFY+   YI+L+T  D   +L+W+I+YWIG E
Sbjct: 521 KFYEADCYIVLKTFLDDSGSLNWEIYYWIGGE 552


>U01184-1|AAC03568.1| 1268|Homo sapiens flightless-I homolog
           protein.
          Length = 1268

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           KFY+   YI+L+T  D   +L+W+I+YWIG E
Sbjct: 520 KFYEADCYIVLKTFLDDSGSLNWEIYYWIGGE 551


>BC025300-1|AAH25300.1| 1269|Homo sapiens flightless I homolog
           (Drosophila) protein.
          Length = 1269

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           KFY+   YI+L+T  D   +L+W+I+YWIG E
Sbjct: 521 KFYEADCYIVLKTFLDDSGSLNWEIYYWIGGE 552


>AB208864-1|BAD92101.1| 1101|Homo sapiens flightless I homolog
           variant protein.
          Length = 1101

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +2

Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           KFY+   YI+L+T  D   +L+W+I+YWIG E
Sbjct: 508 KFYEADCYIVLKTFLDDSGSLNWEIYYWIGGE 539


>X04412-1|CAA28000.1|  782|Homo sapiens plasma gelsolin protein.
          Length = 782

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G +Y+IL+T      NL +D+HYW+G E
Sbjct: 89  FFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 119



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 75  VWARTATKPXEISG-PITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNXEPIPV 242
           V A TA++    +G P   + +         HP F   G+  G+QIWR++  + +PV
Sbjct: 25  VRAATASRGASQAGAPQGRVPEARPNSMVVEHPEFLKAGKEPGLQIWRVEKFDLVPV 81


>BC026033-1|AAH26033.1|  782|Homo sapiens gelsolin (amyloidosis,
           Finnish type) protein.
          Length = 782

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G +Y+IL+T      NL +D+HYW+G E
Sbjct: 89  FFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 119



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 75  VWARTATKPXEISG-PITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNXEPIPV 242
           V A TA++    +G P   + +         HP F   G+  G+QIWR++  + +PV
Sbjct: 25  VRAATASRGASQAGAPQGRVPEARPNSMVVEHPEFLKAGKEPGLQIWRVEKFDLVPV 81


>AL513122-6|CAM20459.1|  731|Homo sapiens gelsolin (amyloidosis,
           Finnish type) protein.
          Length = 731

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G +Y+IL+T      NL +D+HYW+G E
Sbjct: 38  FFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 68



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           HP F   G+  G+QIWR++  + +PV
Sbjct: 5   HPEFLKAGKEPGLQIWRVEKFDLVPV 30


>AL513122-5|CAI14415.1|  260|Homo sapiens gelsolin (amyloidosis,
           Finnish type) protein.
          Length = 260

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G +Y+IL+T      NL +D+HYW+G E
Sbjct: 38  FFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 68



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           HP F   G+  G+QIWR++  + +PV
Sbjct: 5   HPEFLKAGKEPGLQIWRVEKFDLVPV 30


>AL513122-4|CAI14414.1|  228|Homo sapiens gelsolin (amyloidosis,
           Finnish type) protein.
          Length = 228

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G +Y+IL+T      NL +D+HYW+G E
Sbjct: 49  FFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 79



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           HP F   G+  G+QIWR++  + +PV
Sbjct: 16  HPEFLKAGKEPGLQIWRVEKFDLVPV 41


>AL513122-3|CAI14413.1|  782|Homo sapiens gelsolin (amyloidosis,
           Finnish type) protein.
          Length = 782

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G +Y+IL+T      NL +D+HYW+G E
Sbjct: 89  FFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 119



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 75  VWARTATKPXEISG-PITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNXEPIPV 242
           V A TA++    +G P   + +         HP F   G+  G+QIWR++  + +PV
Sbjct: 25  VRAATASRGASQAGAPQGRVPEARPNSMVVEHPEFLKAGKEPGLQIWRVEKFDLVPV 81


>X07066-1|CAA30102.1|   69|Homo sapiens protein ( Human gene for
           gelsolin exon 4. ).
          Length = 69

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIG 349
           F+ G +Y+IL+T      NL +D+HYW+G
Sbjct: 41  FFTGDAYVILKTVQLRNGNLQYDLHYWLG 69



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           HP F   G+  G+QIWR++  + +PV
Sbjct: 8   HPEFLKAGKEPGLQIWRVEKFDLVPV 33


>BC075797-1|AAH75797.1|   85|Homo sapiens Unknown (protein for
           MGC:87550) protein.
          Length = 85

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           H  FA  G+ AG+Q+WRI+  E +PV
Sbjct: 7   HEEFARAGKQAGLQVWRIEKLELVPV 32



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGR 352
           FY G +Y++L T   SR   ++ +H+W+G+
Sbjct: 40  FYVGDAYLVLHTAKTSR-GFTYHLHFWLGK 68


>BC021090-1|AAH21090.1|  715|Homo sapiens SCIN protein protein.
          Length = 715

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           H  FA  G+ AG+Q+WRI+  E +PV
Sbjct: 7   HEEFARAGKQAGLQVWRIEKLELVPV 32



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           FY G +Y++L T   SR   ++ +H+W+G+E
Sbjct: 40  FYVGDAYLVLHTAKTSR-GFTYRLHFWLGKE 69


>AK075123-1|BAC11416.1|  715|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90642 fis, clone PLACE1004078, highly similar to
           Bovine mRNA for adseverin. ).
          Length = 715

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           H  FA  G+ AG+Q+WRI+  E +PV
Sbjct: 7   HEEFARAGKQAGLQVWRIEKLELVPV 32



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           FY G +Y++L T   SR   ++ +H+W+G+E
Sbjct: 40  FYVGDAYLMLHTAKTSRG-FTYHLHFWLGKE 69


>AF276507-1|AAK60494.1|  715|Homo sapiens scinderin protein.
          Length = 715

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           H  FA  G+ AG+Q+WRI+  E +PV
Sbjct: 7   HEEFARAGKQAGLQVWRIEKLELVPV 32



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           FY G +Y++L T   SR   ++ +H+W+G+E
Sbjct: 40  FYVGDAYLVLHTAKTSR-GFTYHLHFWLGKE 69


>AC005281-1|AAD15423.1|  527|Homo sapiens WUGSC:H_DJ0722F20.1
           protein.
          Length = 527

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           H  FA  G+ AG+Q+WRI+  E +PV
Sbjct: 7   HEEFARAGKQAGLQVWRIEKLELVPV 32



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           FY G +Y++L T   SR   ++ +H+W+G+E
Sbjct: 40  FYVGDAYLVLHTAKTSR-GFTYHLHFWLGKE 69


>AB067492-1|BAB67798.1|  626|Homo sapiens KIAA1905 protein protein.
          Length = 626

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165 HPAFANVGRTAGVQIWRIQNXEPIPV 242
           H  FA  G+ AG+Q+WRI+  E +PV
Sbjct: 53  HEEFARAGKQAGLQVWRIEKLELVPV 78



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           FY G +Y++L T   SR   ++ +H+W+G+E
Sbjct: 86  FYVGDAYLVLHTAKTSR-GFTYHLHFWLGKE 115


>X12901-1|CAA31386.1|  827|Homo sapiens protein ( Human mRNA for
           villin. ).
          Length = 827

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G  YIIL     + ++LS+DIHYWIG++
Sbjct: 40  FFDGDCYIIL-AIHKTASSLSYDIHYWIGQD 69


>BC017303-1|AAH17303.1|  421|Homo sapiens VIL1 protein protein.
          Length = 421

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G  YIIL     + ++LS+DIHYWIG++
Sbjct: 40  FFDGDCYIIL-AIHKTASSLSYDIHYWIGQD 69


>AK223398-1|BAD97118.1|  827|Homo sapiens villin 1 variant protein.
          Length = 827

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           F+ G  YIIL     + ++LS+DIHYWIG++
Sbjct: 40  FFDGDCYIIL-AIHKTASSLSYDIHYWIGQD 69


>BC111730-1|AAI11731.1|  812|Homo sapiens AVIL protein protein.
          Length = 812

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           FY+G  Y+IL T   + + LS DIH+WIG++
Sbjct: 30  FYEGDCYVILSTRRVA-SLLSQDIHFWIGKD 59


>AF041449-1|AAC25051.1|  819|Homo sapiens advillin protein.
          Length = 819

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
           FY+G  Y+IL T   + + LS DIH+WIG++
Sbjct: 37  FYEGDCYVILSTRRVA-SLLSQDIHFWIGKD 66


>CR456446-1|CAG30332.1|  824|Homo sapiens dJ1170K4.2 protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPL 110
           C+ H+  P  L    +  WTLA  R  L+  DV GPL
Sbjct: 236 CLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPL 272


>BC039082-1|AAH39082.1|  461|Homo sapiens TMPRSS6 protein protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPL 110
           C+ H+  P  L    +  WTLA  R  L+  DV GPL
Sbjct: 245 CLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPL 281


>AY358398-1|AAQ88764.1|  802|Homo sapiens PVAE354 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPL 110
           C+ H+  P  L    +  WTLA  R  L+  DV GPL
Sbjct: 236 CLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPL 272


>AY055384-1|AAL16414.1|  811|Homo sapiens type II transmembrane
           serine protease 6 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPL 110
           C+ H+  P  L    +  WTLA  R  L+  DV GPL
Sbjct: 245 CLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPL 281


>AY055383-1|AAL16413.1|  811|Homo sapiens type II transmembrane
           serine protease 6 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPL 110
           C+ H+  P  L    +  WTLA  R  L+  DV GPL
Sbjct: 245 CLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPL 281


>AL022314-2|CAI19335.1|  788|Homo sapiens protein (
           (beta-1,4-)-glycoprotein  ).).
          Length = 788

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPL 110
           C+ H+  P  L    +  WTLA  R  L+  DV GPL
Sbjct: 222 CLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPL 258


>AJ319876-1|CAC85953.1|  802|Homo sapiens matriptase-2 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 220 CILHICTPAVLPTLAKAGWTLALSRAFLSDSDVIGPL 110
           C+ H+  P  L    +  WTLA  R  L+  DV GPL
Sbjct: 236 CLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPL 272


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,541,038
Number of Sequences: 237096
Number of extensions: 969319
Number of successful extensions: 2093
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -