Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20856
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    32   0.10 
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    32   0.10 
Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical pr...    30   0.55 
Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical pr...    29   0.72 
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    28   2.2  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      28   2.2  
U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astaci...    27   3.9  
AJ561203-1|CAD99206.1|  279|Caenorhabditis elegans NAS-7 protein...    27   3.9  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   3.9  
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    26   6.7  
U64837-2|AAB04836.3|  213|Caenorhabditis elegans Hypothetical pr...    26   6.7  
U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical pr...    26   6.7  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    26   6.7  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    26   8.9  
AF038610-2|AAB92034.1|  457|Caenorhabditis elegans Hypothetical ...    26   8.9  
AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine re...    26   8.9  

>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIG 349
           +FY   +Y++L+TT ++   L   I YW+G
Sbjct: 530 QFYDADAYLVLKTTREASGQLRHAIFYWLG 559


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIG 349
           +FY   +Y++L+TT ++   L   I YW+G
Sbjct: 530 QFYDADAYLVLKTTREASGQLRHAIFYWLG 559


>Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical
           protein K06A4.3 protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 FYKGXSYIILRTTSDSRNNLSWDIHYWIGR 352
           FY G +YI L    D      WD+H+W+G+
Sbjct: 40  FYIGDAYIALYQKYDG----CWDVHFWLGK 65


>Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical
           protein W04G3.2 protein.
          Length = 565

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 239 GYWFXVLYSPYLHTG-CSADIGKSRMDFGFVTGVFI 135
           G W+ V+YSP + TG CS    K   D G  TG  +
Sbjct: 402 GQWYQVIYSPPVSTGPCSMVSYKKLSDNGEATGSIV 437


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 95  GRRPCPDGSQENKKETRKNDLHP 27
           GRR CPDGS E+K+  +     P
Sbjct: 161 GRRNCPDGSDEHKEHGKCKQHQP 183


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 95  GRRPCPDGSQENKKETRKNDLHP 27
           GRR CPDGS E+K+  +     P
Sbjct: 161 GRRNCPDGSDEHKEHGKCKQHQP 183


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 193 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPRKTKRRH 47
           V P   KAGW +      L D+ + G      ++ V  +  P + K+RH
Sbjct: 726 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 774


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 193 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPRKTKRRH 47
           V P   KAGW +      L D+ + G      ++ V  +  P + K+RH
Sbjct: 719 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 767


>U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astacin
           protease protein 7 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 159 KVHPAFANVGRTAGVQIWRIQN 224
           KV   F+ VGRT+GVQ+  + N
Sbjct: 140 KVDGCFSEVGRTSGVQVLSLDN 161


>AJ561203-1|CAD99206.1|  279|Caenorhabditis elegans NAS-7 protein
           protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 159 KVHPAFANVGRTAGVQIWRIQN 224
           KV   F+ VGRT+GVQ+  + N
Sbjct: 80  KVDGCFSEVGRTSGVQVLSLDN 101


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 95  GRRPCPDGSQENKKET 48
           GRR CPDG  E++ ET
Sbjct: 212 GRRDCPDGEDEHQCET 227


>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
            W04A8.7 protein.
          Length = 1792

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +1

Query: 70   DPSGHGRRPSLXR*AGRSHRCQIKTPVTKP------KSIRLLPMSAEQPVCK-YG 213
            DP+G G+  S  R + + H+ +  TPV K         +R LP+   + +C+ YG
Sbjct: 925  DPTGCGQGFSYVRVSQKPHKDENATPVPKKLVTGTNADLRKLPLKEAKQICRGYG 979


>U64837-2|AAB04836.3|  213|Caenorhabditis elegans Hypothetical
           protein T27E4.5 protein.
          Length = 213

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 155 SQSPSGFCQCRQNSRCANMENTELXTNTRC 244
           S   SG+ QCR +  C++  + E  + TRC
Sbjct: 99  SNLESGYKQCRMDITCSSGYSCENNSKTRC 128


>U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical
           protein C26B2.6 protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 124 HRCQIKTPVTKPKSIRLLP 180
           HRC I  P   PK I L+P
Sbjct: 70  HRCFIADPTEDPKEINLIP 88


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
            protein W04A8.7 protein.
          Length = 1792

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +1

Query: 70   DPSGHGRRPSLXR*AGRSHRCQIKTPVTKP------KSIRLLPMSAEQPVCK-YG 213
            DP+G G+  S  R + + H+ +  TPV K         +R LP+   + +C+ YG
Sbjct: 925  DPTGCGQGFSYVRVSQKPHKDENATPVPKKLVTGTNADLRKLPLKEAKQICRGYG 979


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
            E03G2.2 protein.
          Length = 1503

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 166  IRLLPMSAEQPVCKYGEYRTXNQYPLLXRTXKILQR 273
            + LLP   E PV + GE  +  Q  LL  T  +L++
Sbjct: 1382 VELLPHKLESPVAEGGENFSVGQRQLLCLTRALLRK 1417


>AF038610-2|AAB92034.1|  457|Caenorhabditis elegans Hypothetical
           protein F09D12.2 protein.
          Length = 457

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = -1

Query: 255 SPXEQRVLVXSSVFSIFAHRLFCRHWQKPDGLWLCHGRFYLTAM*SAR 112
           S  +Q V   +    + AH L   HW  P G WL       TA   AR
Sbjct: 279 SDLQQPVKAIADKLFVLAHELM--HWVYPQGTWLMDSIVTRTAEKCAR 324


>AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein109 protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 239 RCSXGLXKFYKGXSYIILRTTSDSRNN 319
           RCS  L  F     YII+R  S +RN+
Sbjct: 113 RCSSWLDIFIANVRYIIMRKVSGARNS 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,208,659
Number of Sequences: 27780
Number of extensions: 150646
Number of successful extensions: 433
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)