Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20856
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.1  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   1.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   2.5  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 122 DRPAYLXRLGRRPCP-DGSQENKKETRKNDLH 30
           DR +Y    G R C  D S+E KK+ R + LH
Sbjct: 241 DRNSYRND-GERSCSRDRSREYKKDRRYDQLH 271


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 221 LYSPYLHTGCSADIGKSRMDFGFVTGV 141
           L+  ++H G    +G S +  GF  G+
Sbjct: 87  LFKGFVHLGAGLAVGFSGLAAGFAIGI 113


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 188 QNSRCANMENTE 223
           +NSRCAN +N +
Sbjct: 410 RNSRCANFDNQD 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,289
Number of Sequences: 438
Number of extensions: 1758
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)