Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20852
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   1.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   1.7  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   1.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   2.3  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   2.3  
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    25   3.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.2  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   5.2  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    24   9.1  

>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 333 CLHSFVHICFVGMLDLSYNLAIGRVFILKVFPSXDFTHSLFMKRPVYK 190
           C+ SF++   V +     NL +  VF+    PS    + LF   PV++
Sbjct: 275 CMLSFIYFENVALYT---NLLLAIVFVYNYLPSCPSLYDLFFASPVFR 319


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 97   VAERLQIGSGAKSEFCNSCFSGTGSPNKT-GNFIHWSLHKQ*VGEV 231
            +A  +     +  + CN+   G    NK  GN IH+ L K   G+V
Sbjct: 1054 LAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEGDV 1099


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 300 GMLDLSYNLAIGRVFILKVFPSXDFTHSLFMKRPVY 193
           GM    Y+LA G  +I  + P  +F  SL    PVY
Sbjct: 565 GMKAQWYDLAAGLTYIRLLLPLKNFPESLIPYLPVY 600


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 15   IHLNKLVPVTVRDYFVCVLWNI*IY 89
            +H N  +P+   D FV +LW+  +Y
Sbjct: 969  LHSNITIPILQSDSFVGILWHTIVY 993


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 170 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFV 24
           +P    + L+ ++ +   +C R AT  +Y Y P +    +S+SYR   +
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 300 GMLDLSYNLAIGRVFILKVFPSXDFTHSLFMKRPVYK 190
           G ++ SYNL +G++         +F+ +    +PV++
Sbjct: 90  GAIETSYNLPVGKIEEAMKLSDEEFSKTYGFSKPVFE 126



 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 351 FERISSCLHSFVHICFVGMLDLSYNLAIG--RVFILKVFPSXD 229
           FE+++   ++F  IC V  L LS+ L     +V+ L   P+ D
Sbjct: 31  FEKVNQHRNTFAFICDVFWLKLSFTLRYSTLQVYNLSKRPTGD 73


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 12   KIHLNKLVPVTVRDYFVCVLWN 77
            K    KL+ +T++D  VCV++N
Sbjct: 1018 KFDYQKLISLTLKDSDVCVIYN 1039


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 140 NSLFAPEPICRRSATFLIYLYVPKYTDKIISYSY 39
           ++LF P+    R A    +L VP  TDK+    Y
Sbjct: 259 DALFVPQQHSARDAQDTFFLKVPASTDKLPDPEY 292


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 140 NSLFAPEPICRRSATFLIYLYVPKY 66
           + +F   P C RS T LIY  VP +
Sbjct: 387 SQIFHSYPFCWRSDTPLIYRAVPSW 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,558
Number of Sequences: 5004
Number of extensions: 25847
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)