Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20852
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140...    32   0.13 
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066...    30   0.53 
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304...    28   2.8  
03_01_0126 + 982163-982527,983006-983204,984141-984222,984284-98...    27   3.7  

>01_05_0545 +
           23109920-23110040,23113363-23113505,23113626-23114009,
           23114106-23114219,23114310-23114483,23114608-23114745,
           23114884-23115021,23115094-23115155,23115268-23115541
          Length = 515

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 185 EILYTGLFINNEWVKSXDGKTFKMK 259
           EI +T LFIN E+V +  GKTFK +
Sbjct: 23  EIKFTKLFINGEFVDAASGKTFKTR 47


>06_03_0627 +
           22903346-22903523,22906010-22906152,22906235-22906618,
           22906980-22907069,22907147-22907320,22907414-22907551,
           22907719-22907856,22907958-22908019,22908240-22908513
          Length = 526

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 185 EILYTGLFINNEWVKSXDGKTFKMK 259
           EI YT LFIN  +V +  GKTF+ +
Sbjct: 42  EIRYTKLFINGRFVDAASGKTFETR 66


>03_05_0006 +
           19527479-19528769,19529693-19530105,19530220-19530430,
           19530531-19530768,19530847-19530997,19531240-19531542
          Length = 868

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 274 GHWQGFHFEGLPIXRLHPLIVYEETS 197
           G W G+ F G+P  R + L+ Y+  S
Sbjct: 216 GPWNGYQFSGVPNLRTNTLLSYQYVS 241


>03_01_0126 +
           982163-982527,983006-983204,984141-984222,984284-984360,
           984548-984622,984725-984790,985220-985315,985424-985540,
           985777-985869,986052-986153,986239-986325,986401-986433
          Length = 463

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 220 VGEVX*WEDLQNENPANGQVIAE 288
           +G++   ED+ ++NPA GQ++ E
Sbjct: 376 LGQIYNREDMDSDNPARGQILGE 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,110,141
Number of Sequences: 37544
Number of extensions: 165363
Number of successful extensions: 446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)