Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20852
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)                31   0.23 
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              28   2.2  
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1)                      27   6.7  
SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)                 27   6.7  
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               26   8.8  

>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 342  ISSCLHSFVHICFVGMLDLSYNLAIGRVFILKVFPSXDFTHSLFMKRPVYKI 187
            I  CLHSF   C V  L  SY+  +    + K  P  +      ++  VYK+
Sbjct: 1379 IVECLHSFCRSCIVSWLQASYHCPVCDTEVHKTRPFLNIRPDCVLQDIVYKL 1430


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 259 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 378
           NP  G+ I ++                  FKLGS WRTMD
Sbjct: 351 NPTTGEKICDISEGDKEDVDKAVKAAKEAFKLGSAWRTMD 390


>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 510

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 342 ISSCLHSFVHICFVGMLDLSYNLAIGRVFILKVFPSXDFTHSLFMKRPVYKI 187
           I  CLHSF   C V  L+ SY   +    I K  P  +      ++  VYK+
Sbjct: 29  IIECLHSFCRCCIVRYLETSYRCPVCDAEIHKTRPLLNIRADNVLQDIVYKV 80


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 342 ISSCLHSFVHICFVGMLDLSYNLAIGRVFILKVFP 238
           I  CLHSF   C V  L+ SY   +    I K  P
Sbjct: 61  IIECLHSFCRCCIVRYLETSYRCPVCDAEIHKTRP 95


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 124 GAKSEFCNSCFSGTGSPNKTGNFIHWS 204
           G  +  C SC +G+G  N+T +   WS
Sbjct: 74  GGPNLLCESCSTGSGGVNRTASLDGWS 100


>SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1)
          Length = 378

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 188 FPVLFGEPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSY 39
           FP LFG+P+       ++  A   + R+ + F ++LY P     ++++SY
Sbjct: 214 FPNLFGQPLLCLMSPSSAPVAVSELNRKGSLFTMFLYSP-----LVAFSY 258


>SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)
          Length = 140

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 67  YFGTYKYIK-NVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFIHWSLHK 213
           Y   YK +  N++E L+     K E   SC++    P K  NF  + L K
Sbjct: 88  YVSVYKILGVNISEHLKWDQHVK-ETSKSCYATLRVPKKINNFTGFKLRK 136


>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1485

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 346  FKLGSPWRTMD 378
            FKLGS WRTMD
Sbjct: 1250 FKLGSVWRTMD 1260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,692,490
Number of Sequences: 59808
Number of extensions: 192129
Number of successful extensions: 419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)