Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20852
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-1|AAA20615.3|  510|Caenorhabditis elegans Aldehyde dehydr...    34   0.039
AF106575-1|AAC78174.2|  537|Caenorhabditis elegans Aldehyde dehy...    33   0.051
Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>U12966-1|AAA20615.3|  510|Caenorhabditis elegans Aldehyde
           dehydrogenase protein1, isoform a protein.
          Length = 510

 Score = 33.9 bits (74), Expect = 0.039
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 194 YTGLFINNEWVKSXDGKTFK 253
           YTG+FINNE+V +  GKTF+
Sbjct: 29  YTGIFINNEFVPAKSGKTFE 48



 Score = 33.9 bits (74), Expect = 0.039
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 259 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 378
           NPANG+V+A+V                  F++GS WR MD
Sbjct: 51  NPANGKVLAQVAEGDKTDVNIAVKAAQNAFRIGSEWRRMD 90


>AF106575-1|AAC78174.2|  537|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 2 protein.
          Length = 537

 Score = 33.5 bits (73), Expect = 0.051
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 259 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 378
           NPANG+++A+V                  FK+GS WR MD
Sbjct: 78  NPANGKLLAKVAEGNRDDVDIAVEAAKKAFKIGSEWRRMD 117



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 203 LFINNEWVKSXDGKTFKMKTLPMAKL 280
           LFINNE+V +  GKTF+       KL
Sbjct: 59  LFINNEFVDAKSGKTFEFVNPANGKL 84


>Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical
           protein T02C12.2 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 85  YIKNVAERLQIGSGAKSEFCNSCFSGTGSPN--KTGNFIHWSLHKQ*VGEVX*W 240
           +++ V ER ++     + FC +CF      +  KT +FI W   +   GE   W
Sbjct: 355 HVEFVVERHELLPNTYTHFCRTCFQEFNYVHGVKTHSFIAWPYTELQTGEQRGW 408


>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 321 FVHICFVGMLDLSYNLAIGRVFI 253
           + H+ FV ++DLS+N+    +F+
Sbjct: 67  YCHLSFVNIIDLSFNIFFALIFV 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,168,442
Number of Sequences: 27780
Number of extensions: 155537
Number of successful extensions: 356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)