Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20852
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   4.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.4  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 50  RLFCLCTLEHINIL 91
           +L+C C L++ NIL
Sbjct: 60  QLYCECILKNFNIL 73


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 26  QTCAGNCKRLFCLCTLE-HINI 88
           Q C+GNCK    L T+  H+ +
Sbjct: 240 QVCSGNCKLNDILLTVRPHLEL 261


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 26  QTCAGNCKRLFCLCTLE-HINI 88
           Q C+GNCK    L T+  H+ +
Sbjct: 240 QVCSGNCKLNDILLTVRPHLEL 261


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 188 ILYTGLFINNEWVKSXDGKTFKMKTLPMAK 277
           +L +GL  NN+ + S    TF +KT  + K
Sbjct: 143 VLDSGLVNNNQPMCSPKLLTFDLKTSKLVK 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,261
Number of Sequences: 438
Number of extensions: 2145
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)