Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20852
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 31 0.25
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 30 0.59
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic... 29 1.4
At5g22550.2 68418.m02633 expressed protein contains Pfam profile... 27 5.5
At5g22550.1 68418.m02632 expressed protein contains Pfam profile... 27 5.5
At3g20230.1 68416.m02563 50S ribosomal protein L18 family simila... 27 5.5
At2g30505.1 68415.m03716 Expressed protein 26 7.2
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila... 26 9.6
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple... 26 9.6
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 31.1 bits (67), Expect = 0.25
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 73 GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIHW 201
G YK K E G G+KS+ C FS +G P + +F+H+
Sbjct: 19 GGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLHY 62
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 73 GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIHW 201
G +K K E + G G+KS+ C FS +G P +F+H+
Sbjct: 19 GGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLHY 62
>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
gi|20530143|gb|AAM27004
Length = 501
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 185 EILYTGLFINNEWVKSXDGKTFK 253
EI +T LFIN +++ + GKTF+
Sbjct: 16 EIKFTKLFINGQFIDAASGKTFE 38
>At5g22550.2 68418.m02633 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 492
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 55 ILSVYFGTYK----YIKNVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFIHWS 204
IL YFGT + + KN+ + + S +KS F ++ F G G +HW+
Sbjct: 397 ILENYFGTGEEVSLFFKNIGKDISF-SISKS-FLSNVFEGVNEYTSQGYHVHWA 448
>At5g22550.1 68418.m02632 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 443
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 55 ILSVYFGTYK----YIKNVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFIHWS 204
IL YFGT + + KN+ + + S +KS F ++ F G G +HW+
Sbjct: 348 ILENYFGTGEEVSLFFKNIGKDISF-SISKS-FLSNVFEGVNEYTSQGYHVHWA 399
>At3g20230.1 68416.m02563 50S ribosomal protein L18 family similar
to ribosomal protein L18 (GI:29342325) [Enterococcus
faecalis V583]; similar to 50S ribosomal protein L18
(Swiss-Prot:O24704) [Synechococcus sp.]
Length = 187
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 264 RVFILKVFPSXDFTHSLFMKRPVYKI 187
R F+L VF S F H+ M RP K+
Sbjct: 89 RPFLLNVFFSRKFIHAKVMHRPTSKV 114
>At2g30505.1 68415.m03716 Expressed protein
Length = 321
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +2
Query: 2 NNIENSPKQTCAGNCKRLFCLCTLEHINILKML 100
++I K+ CA C R C CT ++++ ++
Sbjct: 118 DHIGQEDKRICASGCFRKCCACTCMFVSVVLII 150
>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
to S-receptor kinase gi|392557|gb|AAA62232; contains
Pfam domains PF00954: S-locus glycoprotein family,
PF00069: Protein kinase domain and PF01453: Lectin
(probable mannose binding)
Length = 772
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 274 GHWQGFHFEGLPIXRLHPLIVYE 206
G W G F G+P + +P+ YE
Sbjct: 204 GPWNGLRFTGMPNLKPNPIYRYE 226
>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
BAF60b domain-containing protein / GYF domain-containing
protein contains Pfam profiles PF02201: BAF60b domain of
the SWIB complex, PF02213: GYF domain, PF00628:
PHD-finger
Length = 824
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 2 NNIENSPKQT---CAGNCKRLFCLCTLEHINILKMLRS 106
NN++NSP+ + C RLF ++++ +LK+L S
Sbjct: 331 NNLQNSPQNSEIMCDSKLMRLFGKERVDNLEMLKLLDS 368
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,543,380
Number of Sequences: 28952
Number of extensions: 138956
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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