Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20845
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CU26 Cluster: Large low complexity protein; n=2; Cryp...    33   9.3  

>UniRef50_Q5CU26 Cluster: Large low complexity protein; n=2;
            Cryptosporidium|Rep: Large low complexity protein -
            Cryptosporidium parvum Iowa II
          Length = 2338

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +2

Query: 458  PDRSHIMRL-CYICRERAYQSITKAGIRHNLKLITYKIICFAAS*LQITILKLVSIYKHE 634
            P++SH      Y+C  +       + I   ++ IT  I       LQ  ++ L+S  K +
Sbjct: 1798 PEKSHDTGTKSYLCSIKNNNDYLSSSINGEIRFIT-TIQNIGMEALQFYMMSLLSFDKVD 1856

Query: 635  ICNTKKIKHVPILSKSRLKIIIDTTV 712
            I N K+I H   L    +K ++DT V
Sbjct: 1857 ISNLKEISHQNFLIPLVIKKLLDTLV 1882


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,872,193
Number of Sequences: 1657284
Number of extensions: 12781730
Number of successful extensions: 25470
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25469
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)