Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20845
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.8  
SB_33947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3)             29   2.8  
SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)               29   3.8  
SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)               29   3.8  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.6  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.6  

>SB_52305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 426 PDCLQVRADICRTDRTSCACAIYAVNGLISQSPKP 530
           P CL++RA I  T    CA ++  ++G IS +P P
Sbjct: 66  PPCLKLRASIYMTKVGICAFSLIILSGDISLNPGP 100


>SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 426 PDCLQVRADICRTDRTSCACAIYAVNGLISQSPKP 530
           P CL++RA I  T    CA ++  ++G IS +P P
Sbjct: 66  PPCLKLRASIYMTKVGICAFSLIILSGDISLNPGP 100


>SB_33947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3)
          Length = 338

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 426 PDCLQVRADICRTDRTSCACAIYAVNGLISQSPKP 530
           P CL++RA I  T    CA ++  ++G IS +P P
Sbjct: 66  PPCLKLRASIYMTKVGICAFSLIILSGDISLNPGP 100


>SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
          Length = 490

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 707 LCL**FLIWTYLK*VRVLFFWYYIFHVYKWRRAS 606
           LC+   L+WT +  + + F  Y++F V+KW +A+
Sbjct: 19  LCICAILVWTAIAILTLPF--YFLFRVFKWTQAA 50


>SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
          Length = 535

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 707 LCL**FLIWTYLK*VRVLFFWYYIFHVYKWRRAS 606
           LC+   L+WT +  + + F  Y++F V+KW +A+
Sbjct: 19  LCICAILVWTAIAILTLPF--YFLFRVFKWTQAA 50


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 440  GACRYLPDRSHIMRLCYICRERAYQSITKAGIR 538
            G CR   +  H     +I R R Y S TKAG R
Sbjct: 2500 GKCRQKSNDGHCCSFPFIYRGRRYNSCTKAGRR 2532


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 440 GACRYLPDRSHIMRLCYICRERAYQSITKAGIR 538
           G CR   +  H     +I R R Y S TKAG R
Sbjct: 597 GKCRQKTNDGHCCSFPFIYRGRRYNSCTKAGRR 629



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 440  GACRYLPDRSHIMRLCYICRERAYQSITKAGIR 538
            G CR   +  H     +I R R Y S TKAG R
Sbjct: 2760 GNCRQKTNDGHCCSFPFIYRGRRYNSCTKAGRR 2792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,654,024
Number of Sequences: 59808
Number of extensions: 403679
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)