Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20845
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-15|AAB00704.2|  329|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z48009-9|CAA88085.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U58755-15|AAB00704.2|  329|Caenorhabditis elegans Hypothetical
           protein C34D4.2 protein.
          Length = 329

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 410 LVGIRSGLPPGACRYLPDRSHIMRLCYICRERAYQSITKAGIRHNLKL 553
           LV    G  PG C+ L D   +++LCY  RE  +++  K  ++  +K+
Sbjct: 28  LVERLKGWTPGHCQKLFDEKELIQLCYRAREVFWKNNVKLELKAPVKI 75


>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 437 PGACRYLPDRSHIMRLCYICRERAYQSITKAGIRHNLKL 553
           PG C+ L   + ++ LCY  RE+ +++  K  I   +K+
Sbjct: 90  PGRCQQLFVENELIELCYRAREQFWKNKVKLDIEAPVKI 128


>Z48009-9|CAA88085.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.12 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 370 ALRFALEKF*RNAKYAQPTLKCQEFNS*LLYRSCTSFTLISIRAFVFLYNIGYGNYTIK 194
           A   AL K+ +  +Y      C  F+   +  S  +   ++   FVF++    GN T+K
Sbjct: 202 AASVALNKYNKTLEYQVRFKICARFHKRQVIESTETICFLNFTQFVFMFIYSSGNSTLK 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,768
Number of Sequences: 27780
Number of extensions: 321957
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)