Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20845
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar ...    29   3.1  
At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar ...    29   4.1  
At2g40860.1 68415.m05044 protein kinase family protein / protein...    28   7.1  

>At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 212

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 310 LKSAAHILHSFRIFLTRTLEQDKR*VNVPTVCGVSWYSLRIASRCVPIFAGQIAH 474
           L+ A   +H   I+L R  E + R V+  T   V+WYS+     C+ +   QI +
Sbjct: 148 LEGAVEAIHENLIYL-RNREAEMRIVSEKTNSRVAWYSIMSLGICIVVSGLQILY 201


>At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 217

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 310 LKSAAHILHSFRIFLTRTLEQDKR*VNVPTVCGVSWYSLRIASRCVPIFAGQIAH 474
           L+ A   +H   ++L R  E D R ++  T   V+WYS+     C+ +   Q+ +
Sbjct: 153 LEGAVEAIHENILYL-RNREADMRTMSEKTNSRVAWYSIMSLGVCIAVSGFQVLY 206


>At2g40860.1 68415.m05044 protein kinase family protein / protein
           phosphatase 2C ( PP2C) family protein contains Pfam
           PF00481: Protein phosphatase 2C domain; contains Pfam
           PF00069: Protein kinase domain; similar to partner of
           PIX 1 (GI:21702695) [Homo sapiens]
          Length = 658

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 505 PFTAYIAQAHDVRSVRQISARTWRQSGANTN*PHKLSAR*LIVYPA 368
           P+ A    A   +++R+++ + WR SG  T   HK +    ++Y A
Sbjct: 163 PYLADFGLAEYKKNLREVNLQNWRSSGKPTGGFHKKNMVGTLIYMA 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,256,107
Number of Sequences: 28952
Number of extensions: 277329
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)