Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20843
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   1.6  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   2.1  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   3.7  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   4.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   6.5  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   8.6  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   8.6  

>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 91  KRAIRLTVKLLKPSRKSARELAAMKS 168
           K  +RL + LL+PS+ S  ++AAMK+
Sbjct: 115 KATLRLFIHLLQPSQPSMLQVAAMKT 140


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 322 ISATLIFS--KLDLLILVTFPSFAPLWSQVESLLDFSLS--VLDISPLMLHSLQDDFS*R 155
           I  TL+F    +D+L  VT P+    W       D S     +D+SP +L    DD +  
Sbjct: 152 IPCTLVFQDFNVDVLRYVTLPNLLLNWYFCTQEHDSSEKHGTIDVSPSLLQEFSDDLART 211

Query: 154 QVLLHF 137
            +   F
Sbjct: 212 NIYCEF 217


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +3

Query: 63  NIRSRKLTLKKGDPANCEVVKTIQK------KCKRTCRYEKSSWSECSINGEMSRTDKLK 224
           N+RSRK  LK G      ++  +QK      +    C+    + +  S++  +S+ DK++
Sbjct: 166 NVRSRKSALKNGSEEFRRIMILVQKYAIHNDQVSFNCKKVGDTVASLSLSSRLSKADKIR 225


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 198  EMSRTDKLKSNSDSTCDQSGAKLGNVTRISKSSLLKIRVAEIASKDMGCFENFTIIINEQ 377
            E  RT+ LK       D+ G  L      +   LL  +    +  D+  +  F  +  E 
Sbjct: 965  EPLRTNVLKGRRQPLTDRPGKFLPAADFDAIRKLLSEKFGVSSDCDIAAYTQFPGVFEEY 1024

Query: 378  CLFVDSHLYLSLVPSSY 428
              FVD +  L+ VP+ +
Sbjct: 1025 RQFVDRYGDLTTVPTKF 1041


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 22/104 (21%), Positives = 46/104 (44%)
 Frame = +3

Query: 42  SECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKL 221
           SE +S ++      +      +  EV+   ++K + +     SS SE      +   +K 
Sbjct: 101 SESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKK 160

Query: 222 KSNSDSTCDQSGAKLGNVTRISKSSLLKIRVAEIASKDMGCFEN 353
           +S+SDS+ + S ++  + +  S+S   +  V +   K  G  E+
Sbjct: 161 ESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSES 204


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195 GEMSRTDKLKSNSDSTCDQSGAKLGNVTRISK-SSLLKIRVAEIASK 332
           G MS+    + N DS  D  G +LG + +  + S  L  + AE  +K
Sbjct: 97  GRMSKKRNEQENQDSCRDLDGNRLGTIRQAKELSEYLAKKPAETRAK 143


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 268 PSFAPLWSQVESLLDFSLSV 209
           P FAP++ +++SLLD S  V
Sbjct: 428 PYFAPIYDELDSLLDASTFV 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,640
Number of Sequences: 5004
Number of extensions: 41523
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)