Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20843
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175...    30   1.6  
10_03_0041 + 7314749-7315012,7315111-7316157,7317592-7317681,731...    29   3.8  
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    28   5.0  
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    28   5.0  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    27   8.7  

>10_01_0152 -
           1754113-1754286,1754396-1754551,1755273-1756194,
           1756364-1756414,1757540-1757946,1758918-1759067,
           1759178-1759333,1760175-1761041
          Length = 960

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 358 VKFSKQPMSLLAISATLIFSKLDLLILVTFPSFAPLWSQVESLLDFSLSVLDISPLMLHS 179
           V+ S Q + +L I  TL FS     I     ++  LW  V+S +   + +L  S L+L+ 
Sbjct: 203 VEISSQTLKVLTIKNTL-FSSDKTTISTPSVTYLKLWRPVDSCVFNDMPLLVTSLLVLYH 261

Query: 178 LQD 170
           +QD
Sbjct: 262 VQD 264


>10_03_0041 +
           7314749-7315012,7315111-7316157,7317592-7317681,
           7318291-7318332
          Length = 480

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
 Frame = +3

Query: 63  NIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDST 242
           NI  +  + K+  P N     T  + C R      SS   C I  E + TD LK ++D +
Sbjct: 211 NIIIKNSSSKRKVPINKIAKATAYESCSRR---SASSQGSC-IRSECAMTDTLKDSNDKS 266

Query: 243 CDQSGAKLGNVTRISKSSLLKIRVAEIASKDMGCFENF--TIIINEQCLFVDSHLYLSL 413
               G+ + ++T + +       V  + +  +           IN++C   D H YL L
Sbjct: 267 IHGQGSVV-SLTNLWQEWHYDYGVLTVLTAPLFLCSTMGEDCSINKECSPPDEHTYLQL 324


>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = +3

Query: 51  DSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSN 230
           D + ++R R+L +     A  E ++T++  C +  +    + S CS+ G+M+R + + SN
Sbjct: 249 DERNSLR-RQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSN 307

Query: 231 S 233
           +
Sbjct: 308 A 308


>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = -3

Query: 370 LIIIVKFSKQPMSLLAISATLIFSKLDLLILVTF--------PSFAPLWSQVESLLDFSL 215
           L + ++  K+   +LAI   ++F+ L  +I+V+F        P+  PL    E L DF  
Sbjct: 257 LQVAMEGKKKSTPVLAIVLPIVFAGLLTIIIVSFYIWRKKRLPTKTPLIENTEDLEDFES 316

Query: 214 SVLDISPL 191
             +D+S L
Sbjct: 317 IFIDLSTL 324


>11_01_0346 -
           2589111-2589220,2589613-2589852,2589956-2590028,
           2590301-2590606,2590698-2590912,2591461-2591755,
           2591901-2592065,2592142-2592738,2593029-2593115,
           2593203-2593523,2594047-2596071
          Length = 1477

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  AIRLTVKLLKPSRKSARELAAMKSHLGANAASMGRCPG 210
           A+ L +K+ K SR SAR+LAA  S L   A     C G
Sbjct: 46  ALHLLIKIPK-SRASARQLAAFNSPLQLAAVVFNGCLG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,377,565
Number of Sequences: 37544
Number of extensions: 234185
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)