Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20843
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  36   0.034
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   30   1.7  
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 29   2.2  
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.2  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             28   5.1  
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              28   5.1  
SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              27   8.9  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
 Frame = +3

Query: 12  EACRYVRGAWSECDSK--TNIRSRKLTLKKGD-PANCEVVKTIQKKCK-RTC-RYEKSSW 176
           E  R+  GAWSEC S   + +R+R ++ K  D   N E      K+C    C  +    W
Sbjct: 53  ECPRWTAGAWSECSSTCGSGVRTRFVSCKPRDGTCNSEDKPDAYKECDVMECPTWSVGQW 112

Query: 177 SECSIN-GEMSRTDKLKSNSDSTCDQ 251
           S CS+  G   R   +  +    CD+
Sbjct: 113 SSCSVTCGVGRRLRSVVCSIHGKCDK 138


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 102 PANCEVVKTIQKKC-KRTCRYEKSSWSE 182
           P+  +V K + +KC K TCR+ K +WS+
Sbjct: 471 PSGNKVFKCLNQKCGKETCRHCKENWSD 498


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 114 EVVK--TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQS 254
           E+VK   + K+ K     E++  SE ++NG  S  ++LKS+  +T DQS
Sbjct: 535 EMVKQSAVVKETKPNNVIEETVESETTVNGLESDPERLKSSQGTTVDQS 583


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 144 KRTCRYEKSSWSECSINGEMSRTDKLKSNSD 236
           K  C YE S  +  +I GEM+  D+ K N D
Sbjct: 729 KHVCAYEISGMTRGTIGGEMTVNDEYKYNDD 759


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 379 HCSLIIIVKFSKQPMSLLAISATLIFSKLDLLILVTFPS--FAPLWSQVESLLDFSLSVL 206
           H S +     +  P+S   I  + +F+ L  L  +++ +  F+PL++ +  L   S   +
Sbjct: 366 HFSPLFTYLINLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLIHLYPISYRTI 425

Query: 205 DISPLMLH 182
            +SPL++H
Sbjct: 426 HVSPLLIH 433


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 312 VAEIASKDMGCFENFTIIINEQCLFVDSHLYLSLVPSSYIAKY 440
           V  +A KD+G       +   + L  D+H  LSL+PS    K+
Sbjct: 15  VTRVARKDIGLLWPVLGVSRARLLITDTHKVLSLLPSCSFRKF 57


>SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 295 LDLLILVTFPSFAPLWSQVESLLD 224
           L  + L   PSF+P WSQ+ S LD
Sbjct: 180 LSSMNLAPSPSFSPAWSQLMSTLD 203


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/83 (21%), Positives = 32/83 (38%)
 Frame = +3

Query: 45  ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK 224
           EC S T   S K   +    + CE  +  +   +     E  S SEC    E + T + +
Sbjct: 71  ECGSTTKCESTKEECES--TSECESTRECESTSECESTTECESTSECESTSECASTTECE 128

Query: 225 SNSDSTCDQSGAKLGNVTRISKS 293
           S  +    +   ++    R+ +S
Sbjct: 129 STRECESTKESVRVRQSVRVRQS 151


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 26/95 (27%), Positives = 47/95 (49%)
 Frame = +3

Query: 54   SKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNS 233
            S  N R+  L+ + G PA C      ++        +KSS +   +N  +   DKLK  +
Sbjct: 2475 SSPNSRNNSLSRRHGSPATC------RRSLNSGPDSQKSSLTR--VNA-LVGDDKLKPAN 2525

Query: 234  DSTCDQSGAKLGNVTRISKSSLLKIRVAEIASKDM 338
            D  CD+   KL N   ++K  L++++ +E+ S ++
Sbjct: 2526 D--CDEDN-KLKNELMLAKEQLVRLK-SELTSSNI 2556


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,280
Number of Sequences: 59808
Number of extensions: 290306
Number of successful extensions: 822
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)