Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20843
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    31   0.64 
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81061-6|CAB02938.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81039-11|CAB02780.1|  341|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical p...    28   4.5  
AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical...    28   4.5  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    28   4.5  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    28   4.5  
Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 123 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSGAK 263
           K  ++K KR    +K+   + SIN EMSR DK     + +C   GAK
Sbjct: 285 KKKEEKEKRRKEVKKNREEQLSINPEMSRNDKKDVVEEKSCLDKGAK 331


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
 Frame = +3

Query: 6    NREACRYVR-GAWSECDSK----TNIRSRKLTLKKGD--PAN-C-EVVKTIQKKCKR-TC 155
            N  AC + + G WS+C +K       R    T +     P + C ++ K I K C R +C
Sbjct: 1125 NEHACTWWQFGVWSDCSAKCGDGVQYRDANCTDRHRSVLPEHRCLKMEKIITKPCHRESC 1184

Query: 156  -RYEKSSWSECSINGE 200
             +Y+   WS+CS++ E
Sbjct: 1185 PKYKLGEWSQCSVSCE 1200


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
 Frame = +3

Query: 6    NREACRYVR-GAWSECDSK----TNIRSRKLTLKKGD--PAN-C-EVVKTIQKKCKR-TC 155
            N  AC + + G WS+C +K       R    T +     P + C ++ K I K C R +C
Sbjct: 1125 NEHACTWWQFGVWSDCSAKCGDGVQYRDANCTDRHRSVLPEHRCLKMEKIITKPCHRESC 1184

Query: 156  -RYEKSSWSECSINGE 200
             +Y+   WS+CS++ E
Sbjct: 1185 PKYKLGEWSQCSVSCE 1200


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
 Frame = +3

Query: 6   NREACRYVRGAWSECDSKT----NIRSRKLTLK---KGDPAN-----CEVVKTIQKKCKR 149
           N    R+  G WSEC  KT      ++R ++ K    G+  N     CE + +++    R
Sbjct: 472 NELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICESLASVRPPETR 531

Query: 150 TC------RYEKSSWSECS 188
            C      R+E S WSECS
Sbjct: 532 PCHREDCPRWEASQWSECS 550


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
            F53B6.2a protein.
          Length = 1045

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
 Frame = +3

Query: 6    NREACRYVRGAWSECDSKT----NIRSRKLTLK---KGDPAN-----CEVVKTIQKKCKR 149
            N    R+  G WSEC  KT      ++R ++ K    G+  N     CE + +++    R
Sbjct: 806  NELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICESLASVRPPETR 865

Query: 150  TC------RYEKSSWSECS 188
             C      R+E S WSECS
Sbjct: 866  PCHREDCPRWEASQWSECS 884


>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
           protein ZC190.8 protein.
          Length = 227

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 57  KTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCR----YEKSSWSECSINGEMSRTDKLK 224
           K+N +S   + + G P N +   T +K  K++ R     EK+  +E S + E  +TDK +
Sbjct: 158 KSNRKSTDSSTELGSPTNSQYSTTTRKSSKKSTRSDRKMEKTQRNEKSEHTE-EQTDKTE 216

Query: 225 SNSDSTCDQSG 257
               ST  + G
Sbjct: 217 KTVKSTASRKG 227


>Z81061-6|CAB02938.1|  341|Caenorhabditis elegans Hypothetical
           protein C25D7.12 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = +3

Query: 48  CDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKS 227
           C SK     RK + K     +    K+ QK  K T R  KSS S  S  G+ S++ K KS
Sbjct: 61  CSSKDRQADRKKSKKASATKSSRASKS-QKSAKST-RSGKSSKSGHSSRGKPSKSKKSKS 118

Query: 228 NSDSTCDQSGAKL 266
            S       GA++
Sbjct: 119 KSVRPLAVPGARV 131


>Z81039-11|CAB02780.1|  341|Caenorhabditis elegans Hypothetical
           protein C25D7.12 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = +3

Query: 48  CDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKS 227
           C SK     RK + K     +    K+ QK  K T R  KSS S  S  G+ S++ K KS
Sbjct: 61  CSSKDRQADRKKSKKASATKSSRASKS-QKSAKST-RSGKSSKSGHSSRGKPSKSKKSKS 118

Query: 228 NSDSTCDQSGAKL 266
            S       GA++
Sbjct: 119 KSVRPLAVPGARV 131


>Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -3

Query: 136 FWMVLTTSQLAGSPFFRVNFLERIFVL--ESHSLQAPRTYRHASLF 5
           FW +L + QL   P     F   +  L  E HS     TYRH + F
Sbjct: 45  FWNLLESIQLEKHPVMTWKFCNLVHKLLQEGHSTVPQETYRHLNRF 90


>AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -3

Query: 136 FWMVLTTSQLAGSPFFRVNFLERIFVL--ESHSLQAPRTYRHASLF 5
           FW +L + QL   P     F   +  L  E HS     TYRH + F
Sbjct: 45  FWNLLESIQLEKHPVMTWKFCNLVHKLLQEGHSTVPQETYRHLNRF 90


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 57  KTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 167
           +T +R  +   K+ +  NC +V TI+  CK+ CRY K
Sbjct: 39  RTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 72


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 57  KTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 167
           +T +R  +   K+ +  NC +V TI+  CK+ CRY K
Sbjct: 31  RTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 64


>Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical
           protein T24H10.5 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +3

Query: 69  RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTC- 245
           R+ KLT+     +  + VK    KCK+   YE   +    I   + ++D +  +  +   
Sbjct: 27  RNAKLTITGSLESIMKAVKHENMKCKQIGDYELRGFQSQQIFVFLVQSDSINKHIKTLIG 86

Query: 246 DQSGAKLGNVTRISKSSLLKIRVAEIASKDMGCFEN 353
           ++SG +  N+    +   + ++ AE+  K    FEN
Sbjct: 87  EESGVETNNIIIGEQRVSVAVQSAEVLLKVGVNFEN 122


>AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical
           protein C27A12.7b protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 99  DPANCEVVKTIQKKC---KRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSGAK 263
           +P NC ++K   KKC     T  +  S+  EC     M+  +K    +  TC  +G K
Sbjct: 190 EPVNCRLLKLWMKKCNDDSETSNWINSNTKECP--KCMATIEKNGGCNQITCKNTGCK 245


>AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical
           protein C27A12.7a protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 99  DPANCEVVKTIQKKC---KRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSGAK 263
           +P NC ++K   KKC     T  +  S+  EC     M+  +K    +  TC  +G K
Sbjct: 254 EPVNCRLLKLWMKKCNDDSETSNWINSNTKECP--KCMATIEKNGGCNQITCKNTGCK 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,540
Number of Sequences: 27780
Number of extensions: 226683
Number of successful extensions: 635
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)