Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20839X
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.46
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 1.4
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 2.4
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 3.2
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 3.2
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 24 5.6
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 24 5.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 24 5.6
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 23 7.5
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 23 7.5
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 23 9.9
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 23 9.9
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 23 9.9
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 23 9.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 0.46
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 128 SSTGSRSASKFAANFQNGPQNGAXPVVHTPSNPDDMSSSLLRTIPTGTRQVTSTHPS 298
SST S + S A + + VV + S+P SSS L + T + ST S
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSS 246
Score = 23.8 bits (49), Expect = 5.6
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +2
Query: 128 SSTGSRSASKFAANFQNGPQNGAXPVVHTPSNPDDMSSSLLRTIPTGTRQVTST 289
SST S S+ +++F + P + + + + S+P S S + + +ST
Sbjct: 318 SSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSST 371
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 1.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 125 ASSTGSRSASKFAANFQNGPQNGAXPVVHTPSNPDDMSSSLLRTIPTGTRQVTST 289
+SS + S S A P N + PS+ D SSSL+ T +++ST
Sbjct: 567 SSSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISST 621
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 2.4
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = +2
Query: 140 SRSASKFAANFQNGPQNGAXPVVHTPSNPDD---MSSSLLR----TIPTGTRQVTSTHPS 298
S S NF + P P NP ++SS + T+PT ++ +T+T PS
Sbjct: 374 SSEISSIIYNFSTPISGSSFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPS 433
Query: 299 I 301
+
Sbjct: 434 V 434
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 3.2
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Frame = +2
Query: 131 STGSRSASKFAANFQNGPQNGAXPVVHTPSN-------PDDMSSSLLRTIPTGTRQVTST 289
ST R K +F+N P + TPSN P S+ + +IP T V++
Sbjct: 85 STRKRWRQKRLWSFKNFPFRPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSND 144
Query: 290 HPSI 301
PS+
Sbjct: 145 IPSV 148
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 24.6 bits (51), Expect = 3.2
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 146 SASKFAANFQNGPQNGAXPVVH--TPSNPDDMSSSLLRTIPTGTRQVTST 289
S+++ + N + + PVV+ PSN ++M + L +PT +Q+ T
Sbjct: 378 SSTELSDNSIHQGRRAVDPVVNQNNPSNFEEMIMNKLNKLPTIDKQILGT 427
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 291 WVDVT*RVPVGIVLRRLE 238
W+DVT R G ++RR+E
Sbjct: 939 WIDVTLRTFTGKLMRRIE 956
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 203 VVHTPSNPDDMSSSLLRTIPTGTRQVTSTHPSI 301
+ +TPSN + SS + P ++S HP++
Sbjct: 258 LTYTPSNSQSIYSSQSQPSPYSRPLLSSVHPNL 290
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 126 PPAPDRGVQANSLPISKMAPRTVP 197
PP P + + AN P + +P T+P
Sbjct: 252 PPIPPQALPANGTPNTLASPVTLP 275
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 124 SLQHRIAECKQIRCQFPKWPPERCPXRXAYAFEPXRHELQPPEND 258
+++ I+E + QFP+W E + FE ++ +ND
Sbjct: 77 AIEREISEEQSGEVQFPRWIDEWANTKLGGIFERIFSKMDSMQND 121
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 124 SLQHRIAECKQIRCQFPKWPPERCPXRXAYAFEPXRHELQPPEND 258
+++ I+E + QFP+W E + FE ++ +ND
Sbjct: 77 AIEREISEEQSGEVQFPRWIDEWANTKLGGIFERIFSKMDSMQND 121
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 196 GTVLGAILEIGSEFACTPRSGAGG 125
GT++ + +GS T +GAGG
Sbjct: 319 GTLVLVVFGVGSNLQATVTNGAGG 342
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 167 NFQNGPQNGAXPVVHTPSNPDDMSSSL 247
+F N +N ++ P N DD S+S+
Sbjct: 87 SFDNSLKNELLELIDMPQNGDDSSTSI 113
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = +1
Query: 124 SLQHRIAECKQIRCQFPKWPPERCPXRXAYAFEPXRHELQPPEND 258
+++ ++E + QFP+W E + FE ++ +ND
Sbjct: 77 AIEREVSEEQSGEVQFPRWIDEWANTKLGGIFERIFSKMDSMQND 121
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 232 HELQPPENDPDRNPSGNIN 288
HE+ PPE D PS +++
Sbjct: 40 HEVIPPEEDHGLQPSSDVS 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,036
Number of Sequences: 5004
Number of extensions: 15732
Number of successful extensions: 63
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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