Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20839X
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749... 30 0.30
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 27 2.1
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 27 2.1
12_02_0161 + 14659338-14659467,14659553-14659888,14660034-146602... 27 2.8
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 26 4.9
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408 26 4.9
08_02_0630 - 19483485-19483671,19483761-19484179,19485180-194854... 26 4.9
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 26 4.9
06_03_1358 - 29548440-29549315 26 6.5
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 26 6.5
05_02_0097 - 6573093-6573254,6573297-6573398,6573922-6574005,657... 26 6.5
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771... 26 6.5
08_02_0949 - 22920363-22920685,22922621-22922824,22923170-229232... 25 8.6
05_01_0131 + 888247-888771,889092-889154 25 8.6
03_05_1105 + 30438140-30438350,30438448-30438926 25 8.6
03_01_0173 + 1407891-1408097,1409746-1410123 25 8.6
>05_04_0268 -
19574540-19574582,19574664-19574755,19574843-19574920,
19575095-19575232,19575478-19575606,19575889-19576018,
19576171-19576348,19576715-19576853,19577031-19577120,
19577260-19577421,19577556-19577720,19577909-19578046,
19578657-19578836,19579129-19579257,19579442-19579677,
19579795-19579957,19580030-19580070,19580162-19580489,
19581416-19581553,19581670-19581873
Length = 966
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 140 SRSASKFAANFQNGPQNGAXPVVHTPSNPDDMSSSLLRTIPTGTRQVTS 286
+RS A + + GP G VV TP P+ ++SLL IP R +TS
Sbjct: 136 NRSVGHLAPD-RTGPVAGVE-VVRTPLRPEPSTTSLLLPIPAMVRLITS 182
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 264 VGIVLRRLELMSSGFEGVCTT--GWAPFW 184
V + ++RL L ++ E +C GW PFW
Sbjct: 2420 VKVQVQRLILQATSHENLCQNYVGWCPFW 2448
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 128 SSTGSRSASKFAANF-QNGPQNGAXPVVHTPSNPDDMSSSL 247
SS S++K ++F +NG NG +H S+ D+ SSL
Sbjct: 761 SSLSRSSSTKTISSFSRNGELNGEMSEIHRNSHTTDLQSSL 801
>12_02_0161 +
14659338-14659467,14659553-14659888,14660034-14660266,
14660344-14660805,14660887-14661719,14661802-14661972,
14662052-14662352
Length = 821
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 126 PPAPDRGVQANSLPISKMAPRTVPXP 203
PP P RG A S+P+SK A + V P
Sbjct: 555 PPEPKRGKTATSMPVSK-AGKVVRAP 579
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 244 PPENDPDRNPSGNINPS 294
PP++DP P G+I+PS
Sbjct: 9 PPKSDPGATPIGSISPS 25
>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
Length = 261
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 246 RLELMSSGFEGVCTTGWAPF---WGPFWKLAAN 157
+L++M S G T W P WG W+L AN
Sbjct: 187 QLDVMESLPSGKPTRVWTPMRRSWGSIWRLDAN 219
>08_02_0630 -
19483485-19483671,19483761-19484179,19485180-19485413,
19485714-19485851
Length = 325
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 145 ECKQIRCQFPKWPPERCPXRXAYAFEPXRHELQPPENDPDRNPSGNINPS 294
EC+Q +W +R A P QPP + PD +G+ NP+
Sbjct: 273 ECRQQHITHEEWKEKRALAIATAAAAPP----QPPPSMPDPTAAGSDNPA 318
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 191 GAXPVVHTPSNPDDMSSSLLRTIPTGTRQVTSTHP 295
G + H P D +LL PT V STHP
Sbjct: 439 GQESIAHGPPLSDGAVQNLLPISPTHKLDVASTHP 473
>06_03_1358 - 29548440-29549315
Length = 291
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 121 ASLQHRIAECKQI-RCQFPKWPPERCPXRXAYAFEPXRHELQPPENDPDRNP 273
+SL+ R + K + P PP + R A A P H PP PD P
Sbjct: 47 SSLESRFRKLKSLPAAPLPPPPPAKSLGRSATA--PPHHTDPPPSETPDPAP 96
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 252 LRRLELMSSGFEGVCTTGWAPFWGPFWKLAANLLALRDPV 133
L ++LM +G G T WG WKL+A AL+ P+
Sbjct: 193 LSGMDLMQTG-AGAAWTPMQQSWGAVWKLSAG-AALQAPL 230
>05_02_0097 -
6573093-6573254,6573297-6573398,6573922-6574005,
6574190-6574285,6574373-6574423,6574537-6574677,
6575025-6575081,6575163-6575237,6575323-6575595,
6575689-6575748,6576184-6576285,6576377-6576451
Length = 425
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 151 KQIRCQFPKWPPERCPXRXAYAFEPXRHELQPPE 252
++IRC P + R P A+ + H+ PPE
Sbjct: 286 EEIRCMNPNYTEFRFPQIKAHPWHKVFHKRMPPE 319
>02_02_0200 -
7718760-7718816,7718910-7719011,7719643-7719726,
7719821-7719916,7720016-7720066,7720162-7720302,
7720717-7720773,7720864-7720938,7721033-7721305,
7721382-7721441,7721531-7721620,7722519-7722638
Length = 401
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 151 KQIRCQFPKWPPERCPXRXAYAFEPXRHELQPPE 252
++IRC P + R P A+ + H+ PPE
Sbjct: 297 EEIRCMNPNYTEFRFPQIKAHPWHKIFHKRMPPE 330
>08_02_0949 -
22920363-22920685,22922621-22922824,22923170-22923263,
22923376-22923470,22923612-22923783
Length = 295
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 160 EFACTPRSGAGG 125
EFAC PR+ AGG
Sbjct: 253 EFACAPRAAAGG 264
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 191 GAXPVVHTPSNPDDMSS----SLLRTIPTGTRQVTSTHP 295
G P+ P P S+ S+LR +PTG +TS P
Sbjct: 71 GPDPITSDPPPPPPPSTPTQFSVLRKVPTGPDPITSDPP 109
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 4 IFLGIIPSVLLVMFLVYYSRHNV 72
IFL I+P ++L YY RH V
Sbjct: 62 IFLIILPFIVLCPLYYYYQRHPV 84
>03_01_0173 + 1407891-1408097,1409746-1410123
Length = 194
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 157 IRCQFPKWPPERCPXRXAYA 216
+RC++ +WPP+ R A+A
Sbjct: 15 LRCRWREWPPQPSVSRIAFA 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,327,471
Number of Sequences: 37544
Number of extensions: 126810
Number of successful extensions: 443
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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