Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20839X
         (302 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)               27   2.2  
SB_27566| Best HMM Match : 7tm_1 (HMM E-Value=0.00016)                 27   2.9  
SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)                    26   6.7  
SB_29500| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  
SB_913| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)                   25   8.9  

>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
          Length = 376

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +1

Query: 160 RCQFPKW--PPERCPXRXAYAFEPX--RHELQPPENDPDRNPSG 279
           R + P W  P +  P   A A  P   RH  +PP   P+++P G
Sbjct: 238 RARSPPWAAPQQETPMDSARARSPRGQRHSKKPPWTAPEQDPRG 281


>SB_27566| Best HMM Match : 7tm_1 (HMM E-Value=0.00016)
          Length = 628

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -3

Query: 252 LRRLELMSSGFEGVCTTGWAPFWGPFWKLAANL-LALRDPVLEAXXXXXXXXXXXXXXPV 76
           + R+ L  + ++G C TG+   WG   K +  + +AL+    +                V
Sbjct: 261 MMRIALQGTSYDGYCITGYVIRWGLQGKSSHMMRIALQGTSYDEDRVTRYVIRWVLHYKV 320

Query: 75  QHVVSRVVHEEHDEQN*WY 19
           +H ++  + + H     WY
Sbjct: 321 RHTMAIALQDTHTMGITWY 339


>SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 219  EGVCTTGWAPFWGPFWKLA 163
            +GVCT  WA F  P +K A
Sbjct: 1302 DGVCTKNWATFGSPRYKAA 1320


>SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)
          Length = 543

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 250 ENDPDRNPSGNINPS 294
           E+DPD  P+GN+ P+
Sbjct: 296 EDDPDGEPTGNVTPT 310


>SB_29500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 219 EGVCTTGWAPFWGPFWKLA 163
           +GVCT  WA F  P +K A
Sbjct: 45  DGVCTKIWATFGSPRYKAA 63


>SB_913| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
          Length = 856

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 ANFQNGPQNGAXPVVHTPSNPDDMSS 241
           A  Q  P +G     HTPS PDD+++
Sbjct: 556 AQAQLTPNSGPGAYPHTPSVPDDVAA 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,915
Number of Sequences: 59808
Number of extensions: 129129
Number of successful extensions: 409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)