Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20839X
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   3.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   3.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   5.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   5.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 174 KMAPRTVPXPXCIRL 218
           +  P  VP P CI++
Sbjct: 52  RFCPNVVPKPLCIKI 66


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 174 KMAPRTVPXPXCIRL 218
           +  P  VP P CI++
Sbjct: 52  RFCPNVVPKPLCIKI 66


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 83  HQYSTLCLE*YTRNMTSRTD 24
           H+    CL   T N+TSRT+
Sbjct: 526 HRMPRYCLFGNTVNLTSRTE 545


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 83  HQYSTLCLE*YTRNMTSRTD 24
           H+    CL   T N+TSRT+
Sbjct: 526 HRMPRYCLFGNTVNLTSRTE 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,143
Number of Sequences: 438
Number of extensions: 1188
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)