Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20838
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 30 0.14
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.44
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.0
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.3
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 1.8
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 1.8
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 26 2.3
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 26 2.3
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 26 2.3
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 26 3.1
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 26 3.1
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 5.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 5.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.2
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 24 9.5
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 30.3 bits (65), Expect = 0.14
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 23 KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 151
K KH + + +KS + ++ K+++ NK+N +E A Q W + K+
Sbjct: 131 KKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.44
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 220 VHKLNRVFGEDKSELNWETIPDDVL 146
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 135 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 236
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 276 SAIVALNTLLSVKARPSRLYISLIAFSAKISLNSTG 169
S IVA +S+K + ++LY+S+ + + LN TG
Sbjct: 237 SDIVAYENFVSLKRKLTQLYVSIHDLISYVHLNYTG 272
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 165 VSQLSSDLSSPKTRLSLCTSATV 233
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 47 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 139
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 209 KLMYKRDGLALTLSNVFK--ATMADLPTADGKDKTSPRVXWKLIALW 343
K+ K D + L+N+F + D DG+ T ++ W L+ +W
Sbjct: 38 KINIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLLIIW 84
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 209 KLMYKRDGLALTLSNVFK--ATMADLPTADGKDKTSPRVXWKLIALW 343
K+ K D + L+N+F + D DG+ T ++ W L+ +W
Sbjct: 58 KINIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLLIIW 104
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 209 KLMYKRDGLALTLSNVFK--ATMADLPTADGKDKTSPRVXWKLIALW 343
K+ K D + L+N+F + D DG+ T ++ W L+ +W
Sbjct: 38 KINIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLLIIW 84
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +2
Query: 194 AENAIKLMYKRDGLALTLSNVFKATMADLPTADGKD-----KTSPRVXWK 328
A+ K +YK GL + + + +LP A GK +P+V W+
Sbjct: 110 AQRLFKTIYKNGGLYIKMGQIIAMQSNNLPEAYGKAFQGMFDNAPQVEWE 159
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 209 KLMYKRDGLALTLSNVFK--ATMADLPTADGKDKTSPRVXWKLIALW 343
K+ K D + L N+F + D DG+ T ++ W L+ +W
Sbjct: 38 KINIKTDKIKFFLDNLFTEFSKFHDSCYPDGRISTRSKLRWPLLIIW 84
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 5.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 235 ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 125
E V +H L+ F ED+ E E I DV A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 5.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 424 FQLVPDSQYQVLVXFSVQDLEVDLVVLPQSD*LPXDSRACLVLAVSRRQVCHRRLEHI 251
++L PD Y +L S + +V P S P D L+L V+ C RR + I
Sbjct: 809 YKLDPDDVYNILSFLSFANSQVTSYTPPNSIDRPND---ILILEVAPFVRCMRRYDRI 863
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 2 DYDSAVEKSKHLYEEKKS 55
DY+ E++K LY+E+KS
Sbjct: 193 DYEKIKEENKRLYKERKS 210
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 114 STPINFGSRAPRTSSGIVSQLSSDLSS 194
STP++ S P + S S+LSS L+S
Sbjct: 730 STPLSNSSAYPSSGSSTFSRLSSTLTS 756
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 7.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 368 ILNTEXNQYLVLGVXH*LERRPYGLRSQ 451
++ + +Y+V+G H +E+ PY + S+
Sbjct: 518 LVKSPQGRYIVIGTCHSIEKIPYEILSE 545
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 7.2
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = -1
Query: 270 IVALNTLLSVKARPSRLYISLIAFSAKISLNSTGKQSRTMSLEPWSQS**AYSMQFILLF 91
+V +L++ A P IS+ + +S GKQ+ +S WS++ A + F+
Sbjct: 68 LVTHKVILTLIAVPVVFAISIPFIGMQTPASSHGKQTTQVSTGNWSKNAVAARLGFL--- 124
Query: 90 RISLFTTFVMTSLFFSSYKCLLFST 16
L+ T S+ + + LL S+
Sbjct: 125 ACGLYVTSYFFSIKNNPFALLLISS 149
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 396 WYWESGTNWNGDHMAFG 446
WYW +GT W+ DH G
Sbjct: 417 WYWNNGT-WD-DHYGLG 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,186
Number of Sequences: 5004
Number of extensions: 31426
Number of successful extensions: 116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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