Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20838
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           29   1.3  
04_03_0314 - 14238620-14240128                                         29   2.3  
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317...    27   9.3  

>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 196 GEDKSELNWETIPDDVLGALEPKLIGVLHAVHLVVSYQFVH 74
           GED++ LNWET     LGA      G+ H +H   + +FVH
Sbjct: 462 GEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 167 FPVEFRLIFAENAIKLMYKRDGLALTLSNVFKATMADLPTADGKDKTSPRVXWKL 331
           +P  FRL  A  +  L      LA+ L+   +A  ADL    G  + +PR+  K+
Sbjct: 132 YPALFRLFQAPTSHPLSPNLSTLAVALTPAAEALAADLAALRGSSELAPRLAAKM 186


>12_02_0847 +
           23630937-23631099,23631200-23631396,23631604-23631738,
           23631904-23632077,23632195-23632407,23632507-23632751,
           23632890-23632930,23633200-23633238,23633552-23633565
          Length = 406

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 8   DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW--LQGSKDIVRDC 166
           D  +++ K  Y E   + + N + ++   N +     AY+LW    G K  +R+C
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,602
Number of Sequences: 37544
Number of extensions: 209548
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)