Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20838
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32856| Best HMM Match : rve (HMM E-Value=0.11)                      28   4.2  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   5.5  
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)                   27   5.5  
SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)                       27   7.3  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 27   7.3  
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)              27   9.6  
SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_32856| Best HMM Match : rve (HMM E-Value=0.11)
          Length = 323

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +2

Query: 104 NCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNVFKATMADLP 283
           N  ++ + L  +GS+ +V    P +FRLI   +  K +   DG++   S V  AT+ D  
Sbjct: 81  NGFQFGFALHYEGSR-LVPKKLPGDFRLIHHLSYPKGLSVNDGISSDHSTVRYATIGD-- 137

Query: 284 TADGKDKTSPRVXWKLI 334
            A  K K + R   KL+
Sbjct: 138 -AISKIKAAGRGYCKLV 153


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 80  KLIRNNKMNCMEYAYQLWLQGSKDIVRDCF 169
           +L  NN+M    +A+  WL+G +   R C+
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -1

Query: 231 PSRLYISLIAFSAKISLNSTGKQSRTMSLEPWSQS**AYSMQFILLFRISLFTTFVMTSL 52
           P   Y        K+  +  G  S+   L  W +   A S+++ LL     F T VM S 
Sbjct: 209 PKHAYFRQTEGKGKMFADCYGHSSKVNEL--WKKISPASSLEYELLLCNETFITGVMISK 266

Query: 51  FFSSYK 34
           F +SYK
Sbjct: 267 FHTSYK 272


>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
          Length = 322

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +2

Query: 47  KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVRD 163
           KK +   ++V  L + NK N +E         Q  LQGSKDIVR+
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVRN 251


>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
          Length = 186

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 46  EEERSHHKCREQTDTKQQDELHGVRLSTLAPG 141
           +EERS    R   D  ++  +H VRL +  PG
Sbjct: 115 DEERSQSSVRHGPDLTEELAVHAVRLGSRLPG 146


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 150 TSSGIVSQLSSDLSSPKTRLSLCTSATVSL 239
           T SG++ QL  DL   KTR     SA + L
Sbjct: 103 TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
          Length = 659

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 236 ALTLSNVFKATMADLPTADGKDKTSPRVXWKLIALWENNKVYFKILNTEXNQYLVL 403
           A+ +SN       DLP  DG D     +  +L   W   K   K+  T+ + +  L
Sbjct: 21  AVEISNRRPLEQTDLPNLDGADFKCENLTKRLENSWAREKAVAKLRRTQPDLWKAL 76


>SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 2   DYDSAVEKSKHLYEEKKSE 58
           DYD ++EK  HL+++K+ +
Sbjct: 189 DYDRSLEKDAHLHDDKRDD 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,501
Number of Sequences: 59808
Number of extensions: 241273
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)