Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20838
(453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 0.69
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 0.69
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 30 0.69
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 30 0.69
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 0.91
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 0.91
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 27 4.8
U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical pr... 27 6.4
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 27 6.4
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 27 6.4
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 27 6.4
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 27 6.4
Z81056-10|CAB02904.2| 301|Caenorhabditis elegans Hypothetical p... 27 8.4
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 2 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 112
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 2 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 112
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 30.3 bits (65), Expect = 0.69
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 275 DLPTADGKDKTSPRVXWKLIALWENNKVYFKILNTEXN 388
DL T D KD+ +P V KL+AL N +V+ K T N
Sbjct: 115 DLMTFDKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 30.3 bits (65), Expect = 0.69
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 275 DLPTADGKDKTSPRVXWKLIALWENNKVYFKILNTEXN 388
DL T D KD+ +P V KL+AL N +V+ K T N
Sbjct: 606 DLMTFDKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 59 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 235
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 59 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 235
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
C27A7.4 protein.
Length = 1403
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 191 FAENAIKLMYKRDGLALTLSNVFKA---TMADLPTADGKDKTSPRVXWKLIALWENNKVY 361
+A A+ L +K + L F+ + DL T D T P++ + +ENN+ Y
Sbjct: 1023 YAHKAVMLYHKAGMIGRALDLAFRTEQFSALDLITKDLDAGTDPKILRRAAEFFENNQNY 1082
Query: 362 FKILN 376
K +N
Sbjct: 1083 EKAVN 1087
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 129 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 236
FG APRT SG + Q S++L S+PKT A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 141 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 236
A + SSG+VSQ+SS SS + R +L ++ S
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 107 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 196
C+ Y Y+L + +KD+ RDCF F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171
>U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical
protein C03F11.3 protein.
Length = 563
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 102 ILLFRISLFTTFVMTSLFFSSYK 34
I LF +S FTT + L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 226 ALVHKLNRVFGEDKSELNWETIPD 155
AL+H+ + E K + NWE PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 226 ALVHKLNRVFGEDKSELNWETIPD 155
AL+H+ + E K + NWE PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 226 ALVHKLNRVFGEDKSELNWETIPD 155
AL+H+ + E K + NWE PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 226 ALVHKLNRVFGEDKSELNWETIPD 155
AL+H+ + E K + NWE PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764
>Z81056-10|CAB02904.2| 301|Caenorhabditis elegans Hypothetical
protein F09F3.4 protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 179 FRLIFAENAIKLMYKRDGLALTLSNVFKATMADLP 283
F+ IF + L+Y DGL +T +VF+ +P
Sbjct: 248 FQFIFLSLSFALIYALDGLVMTHFHVFQQQKRTIP 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,344
Number of Sequences: 27780
Number of extensions: 178121
Number of successful extensions: 667
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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