Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20838
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.6  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   4.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   4.7  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   4.7  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   4.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   4.7  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 43  GEEERSHHKCREQTDTKQQDELHGV 117
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 EFRLIFAENAIKLMYKRDGLALTLSNVFKATMADLPTADGKDKTS 310
           ++  +     I +  + + +  T+S+   + +  LPT  GK++TS
Sbjct: 104 DYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETS 148


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 EFRLIFAENAIKLMYKRDGLALTLSNVFKATMADLPTADGKDKTS 310
           ++  +     I +  + + +  T+S+   + +  LPT  GK++TS
Sbjct: 152 DYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETS 196


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 EFRLIFAENAIKLMYKRDGLALTLSNVFKATMADLPTADGKDKTS 310
           ++  +     I +  + + +  T+S+   + +  LPT  GK++TS
Sbjct: 152 DYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETS 196


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 EFRLIFAENAIKLMYKRDGLALTLSNVFKATMADLPTADGKDKTS 310
           ++  +     I +  + + +  T+S+   + +  LPT  GK++TS
Sbjct: 152 DYSTLIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIGKNETS 196


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 46  EEERSHHKCREQTDTKQQDELH 111
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 46  EEERSHHKCREQTDTKQQDELH 111
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,920
Number of Sequences: 438
Number of extensions: 2110
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)