Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20838
         (453 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   0.48 
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    29   1.5  
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    28   3.4  
At4g28590.1 68417.m04089 expressed protein                             27   7.8  
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr...    27   7.8  

>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 144 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 236
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 405 PNTKYWLXSVFKILK*TLLFSHRAINFQXTLGLVLSLPSAVGRSAIVALNTLLSVKARPS 226
           PNT+Y L  V + +K + LF H A     T G++ S  +  G+   V  N +L       
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYGILSS--NTRGKPVRVMKNVMLCGDCHEF 862

Query: 225 RLYISLI 205
             YIS++
Sbjct: 863 FKYISVV 869


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -3

Query: 307 CLVLAVSRRQVCHRRLEHIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPK 128
           C V+  S   VC +R   I +   +T A     N     + S   W ++  D+   +  +
Sbjct: 113 CCVVGWSSHPVCRKRYRFIIRSGGDTKACTRCGNTQNLSEGSNCKWCSMALDIENWVYSQ 172

Query: 127 LIGVLHAVHLVV-SYQFVHDIC 65
           L    H +H V+ S  + H +C
Sbjct: 173 LEDNTHLLHGVIHSNGYAHLLC 194


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 217 HKLNRVFGEDKSELNWETIPDD 152
           H +  V G+D SE++WE   DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201


>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 387

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = +2

Query: 53  SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 223
           +E IT V+  L R++    ++   Q   +G K  + DC   EFRL   I  +     MY+
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMYE 321

Query: 224 R-DGLALTLSNVFKATMADLPTADGKDKTSPRVXWKLIALWENNKVYFKILNTEXNQY 394
               L +   N  K   A L   D +   S      +  L+E++ +  +I  TE N++
Sbjct: 322 GIRALTIDKDNSPKWNPATLDEVDDEKINS------VFKLFEDDDIELQIPETEENRW 373


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,219,609
Number of Sequences: 28952
Number of extensions: 168671
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)