Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20837
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    31   0.036
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   5.5  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    23   9.6  
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    23   9.6  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    23   9.6  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    23   9.6  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    23   9.6  

>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 31.5 bits (68), Expect = 0.036
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 289 NLHXNSDHQVQLEE*LAMKCQVGNGSQQPTIAQLSLLDVEATVAFD 152
           ++H  +D+++ LE+ L  KC  GNG   P  ++    D +A V  D
Sbjct: 16  SVHSGNDNEIDLEKGLLPKCNTGNGGTTP-CSEPPHYDSDAVVEMD 60


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 208 VGCRCQLDTSSQVILPVVPDDQSFXEDYAGVFH 306
           VGCRC+ D+   +  P   D+    +++   FH
Sbjct: 400 VGCRCRGDSPDTIEFPTDSDE---LQEFCNFFH 429


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 105 SLGSDLGKSATTLNCSSKATVASTSNKE 188
           SL S+LGK+  T    SKA V ++++ E
Sbjct: 473 SLSSNLGKTNPTSVYQSKANVTTSADVE 500


>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 190 LSLLDVEATVAFDEQLRVVADFPRSEPSDGPVQALLVVEA 71
           LSL + +     DEQ      F RS+P+     A+L+VE+
Sbjct: 44  LSLFEKKCRSVLDEQSERFKMFHRSQPNRVRPGAVLLVES 83


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 244 LAMKCQVGNGSQQPTIAQLSLLDVEATVAFDE 149
           LA+ C++        IA+++++D+++ V +DE
Sbjct: 269 LAIDCEMVRTENGLEIARVTIVDMKSEVIYDE 300


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 65  DRSLYYKESLDRPITWLRPGEISDNP-QLFVEGYSRFDVQQGELGDCW 205
           D   +  +  D P+  +  G+  ++P +  V  Y+ FDVQ   L D W
Sbjct: 62  DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGW 109


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 104 ITWLRPGEISDNPQLFVEGYSRFDV 178
           + WL+P E S  P + + G   + V
Sbjct: 421 VQWLQPSEFSSRPVIVICGEDAYTV 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,299
Number of Sequences: 5004
Number of extensions: 23797
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)