Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20837
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 57 4e-09
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 30 0.53
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 28 2.1
04_04_0191 + 23468410-23468455,23468560-23468699,23469119-234692... 28 2.1
08_02_0703 - 20188489-20190246 27 3.8
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 27 5.0
05_06_0248 + 26673107-26674351 27 5.0
04_03_0241 - 13243938-13244453,13244538-13246334 27 5.0
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 27 5.0
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 26 6.6
09_04_0321 - 16664316-16664939,16665369-16666262 26 6.6
06_02_0065 - 11073816-11074384,11074605-11075160 26 6.6
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 26 6.6
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 26 6.6
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 26 6.6
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 26 8.7
03_01_0316 + 2487917-2488003,2488104-2488676 26 8.7
02_03_0349 + 18010414-18014283 26 8.7
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 56.8 bits (131), Expect = 4e-09
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Frame = +2
Query: 5 IRSRCLAEG-RLFEDPEFPAVDRSLYY---KESLDRPIT--WLRPGEI------SDNPQL 148
+R +A+G R F D EFP DRSL+ SL + W+RP +I S P L
Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIAKEVSISSQPCL 1686
Query: 149 FVEGYSRFDVQQGELGDCWLLAAVANLT 232
F + DV QG LGDCW L+AVA LT
Sbjct: 1687 FSGSVNSSDVCQGRLGDCWFLSAVAVLT 1714
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 29.9 bits (64), Expect = 0.53
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = -2
Query: 235 KCQVGNGSQQPTIAQLSLLDVEATVAFDEQLRVVADFPRSEPSDGPVQALLVVEAAVHGR 56
+ VG+G P + ++ EA V + ++ + RS P VVEAA HG+
Sbjct: 85 EANVGSGDSSPAVR----VEEEAEVEAEAEVGTAVEPQRSGTLASPTD---VVEAAQHGQ 137
Query: 55 KLGVFEESTFS*APRSY 5
+ +S + +PRSY
Sbjct: 138 RQQQASQSQQTPSPRSY 154
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -2
Query: 244 LAMKCQVGNGSQQPTIAQLSLLDVEATVAFDEQLRVVADFPRSEPS 107
+A+ C + N Q+P++A+++ + E+ + E+ + D RS+PS
Sbjct: 502 IALLCTMYNPDQRPSMAEIAGMLQESDGSVVEKWETLKDAERSKPS 547
>04_04_0191 +
23468410-23468455,23468560-23468699,23469119-23469201,
23469346-23469550,23469632-23469735,23470290-23470449
Length = 245
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 257 TGRITCDEVSSW---QRQPTANNRPTLLVGRRSDCSLRRTV 144
T R T + ++SW RQ N +LVG +SD S RR V
Sbjct: 89 TRRETFNHLASWLEDARQHANANMTIMLVGNKSDLSHRRAV 129
>08_02_0703 - 20188489-20190246
Length = 585
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 126 KSATTLNCSSKATVASTSNKES 191
+S++ L+CSS+A+ ASTS+ S
Sbjct: 154 RSSSNLSCSSRASAASTSSSGS 175
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 212 AAVANLTLHRKLFFQLYLMIRVSMKIMRASSISVSGYTGAGW 337
+A LT K+ +Y M++ +M+I+ A S V+GY GW
Sbjct: 487 SAYTLLTPSVKVQLLIYFMLKYAMEILLAESSVVTGYY-FGW 527
>05_06_0248 + 26673107-26674351
Length = 414
Score = 26.6 bits (56), Expect = 5.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 104 WACPGSPCSRGCGP 63
W+ P +PC CGP
Sbjct: 6 WSAPAAPCQPSCGP 19
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = -3
Query: 231 VKLATAANSQQ---SPNSPCWTSKRL*PSTN 148
+++A AA +++ SP SPCWT+ L P+ N
Sbjct: 544 MEVAVAAATEEPLLSPQSPCWTAVHL-PAAN 573
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 47 PEFPAVDRSLYYKESLDRPITWLRPGEISDNP 142
PE P + ++SL +P+T L G I+D+P
Sbjct: 289 PELPRIPEQDQQRDSLQKPVTTLE-GLIADDP 319
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 337 PPSARIARNGNGRRPHNLHXNSDHQVQLEE*LAMKCQVGNGSQQ 206
PP NGNG +N + N+ L + LA + Q+ N Q
Sbjct: 220 PPMVLTRSNGNGPNNNNNNNNNGENPTLAQVLAQQAQLMNMMMQ 263
>09_04_0321 - 16664316-16664939,16665369-16666262
Length = 505
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 155 EGYSRFDVQQGELGDCWLLAAVANLTLHRKLFFQLYLMIRVSMKIMRASSISVSGYT 325
E + R V++GEL L AV TL L L RVS A +++ GY+
Sbjct: 335 EAFGRGAVEEGELARLPYLNAVIKETLRLHPPAPLLLPHRVSSDSEPAGGVTLGGYS 391
>06_02_0065 - 11073816-11074384,11074605-11075160
Length = 374
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 41 EDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQQGELG 196
EDP +P +Y+K SL I E S P +G+ RFD+Q G
Sbjct: 252 EDPPYPVTADPMYFKGSLYWHICKELLQEGSPPPP---QGFLRFDLQDETFG 300
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 122 GEISDNPQLFVEGYSRFDVQQGEL 193
GE DN L + G R DVQ+G++
Sbjct: 328 GEAGDNVGLLLRGLKRGDVQRGQV 351
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 121 RSEPSDGPVQALLVVEAAVHGR 56
R++P+DG +ALL ++ +HG+
Sbjct: 821 RAQPNDGFAKALLALDRKLHGK 842
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 129 SATTLNCSSKATVASTSNKESWAIVGC-WLPLPT*HFIA 242
SAT L + T T++ E W ++ C WL H +A
Sbjct: 142 SATLLKMGALETSKVTNDHEGWRLITCIWLHAGVVHILA 180
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 172 EATVAFDEQLRVVADFPRSEPSDGPVQALLVVEAAV 65
E A E PR+ GPV A LVV+A +
Sbjct: 5 EPGAAVTEPAATAVVLPRASTPTGPVSAFLVVDARI 40
>03_01_0316 + 2487917-2488003,2488104-2488676
Length = 219
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 101 ACPGSPCSRGCGPRPETRGLRR 36
A PG+P GPR T+GLRR
Sbjct: 71 AAPGAPARAAVGPR--TKGLRR 90
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 190 LSLLDVE-ATVAFDEQLRVVADFPRSEPSDGPVQALLVVEAAVH 62
LS LD++ ++ E LR V R + S GP ALL E +H
Sbjct: 1160 LSELDIDHPSILLREPLRSVTTIKRLQISGGPNLALLPEEYLLH 1203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,880,987
Number of Sequences: 37544
Number of extensions: 196004
Number of successful extensions: 621
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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