Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20836
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   0.91 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 372 VGRGQVPSSGGNGGQPDGQRKEDG 443
           +G     S GG GG  DG R + G
Sbjct: 84  LGENNDDSGGGRGGGRDGDRGDGG 107


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 165 PPGTRSGSTPRSPGPRR 215
           PPG    STPRS   +R
Sbjct: 832 PPGVPLNSTPRSTPDKR 848


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 159 APPPGTRSGSTPRS 200
           APPP T S  +P S
Sbjct: 33  APPPATTSSGSPAS 46



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 327 HLAGHRVHQQEDVLH 371
           H AGH +H Q  V++
Sbjct: 324 HHAGHHIHAQHHVVN 338


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 115 PCIDAFLLSPGDQVDERRDHVP 50
           P  DAFL+     ++ RRD  P
Sbjct: 486 PMYDAFLIDQSLALNRRRDENP 507


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 115 PCIDAFLLSPGDQVDERRDHVP 50
           P  DAFL+     ++ RRD  P
Sbjct: 486 PMYDAFLIDQSLALNRRRDENP 507


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 391 PHPAEMVANLTAK 429
           P   E+VAN+TAK
Sbjct: 185 PRDGEIVANITAK 197


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 507  QSRPRVRKYPGSRLMCGS 454
            Q  P V KY   +L+CG+
Sbjct: 1444 QIGPTVEKYTLEKLLCGT 1461


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 182 GTRPRGWSPSARTCPRCRTRSGTLHRRVSSV 90
           G    G+   A TC  C++  G  +  +SS+
Sbjct: 9   GEPAAGFHFGAFTCEGCKSFFGRTYNNISSI 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,973
Number of Sequences: 336
Number of extensions: 2907
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)