Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20836
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.46 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.46 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.61 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.80 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 114 LASTRFFCPPVTRLTSD 64
           L +T  FCPP  RLTS+
Sbjct: 305 LNATTLFCPPNLRLTSE 321


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 114 LASTRFFCPPVTRLTSD 64
           L +T  FCPP  RLTS+
Sbjct: 395 LNATTLFCPPNLRLTSE 411


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 351 QQEDVLHVGRGQVPSSGGNGGQPDGQRKEDGCHRG 455
           QQ+  +   + Q PSSG  G QP   +      RG
Sbjct: 3   QQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRG 37



 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = -3

Query: 160 AHQHEHVHDAGLAQEPCIDAFLLSPGDQVD 71
           +H H+   D  +A++  +   +++P DQ++
Sbjct: 705 SHGHDSGQDEDMAEDLSMAPDIMTPEDQIE 734


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 138 WTCSC*WAPPPGTRSGSTPRSPGPRRCRQNSRWATTS 248
           W  SC    PP  ++  + +  G RR R+  R+ + S
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNSVS 421



 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 383 TTSHVKYIFLLVY 345
           T SH +Y  LLVY
Sbjct: 194 TLSHAEYSMLLVY 206


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 141 STMPDSLRNLASTRFFCPPVTRLTSDETTFP 49
           + +P S  N A  R+FCP  +++  D  T P
Sbjct: 271 AAIPTS-ENPADYRYFCPDGSKVPIDANTKP 300


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 141 STMPDSLRNLASTRFFCPPVTRLTSDETTFP 49
           + +P S  N A  R+FCP  +++  D  T P
Sbjct: 271 AAIPTS-ENPADYRYFCPDGSKVPIDANTKP 300


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 141 STMPDSLRNLASTRFFCPPVTRLTSDETTFP 49
           + +P S  N A  R+FCP  +++  D  T P
Sbjct: 271 AAIPTS-ENPADYRYFCPDGSKVPIDANTKP 300


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 328 IWLDIEYTNKKMYFT 372
           IW  +++T K +YFT
Sbjct: 224 IWKGVKWTGKVVYFT 238


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 328 IWLDIEYTNKKMYFT 372
           IW  +++T K +YFT
Sbjct: 277 IWKGVKWTGKVVYFT 291


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 101 RVDARFLSESGIVDMFVLMGSTPGDAFRQYTAL 199
           R+   F  +SG   +  ++G+TP D  +   AL
Sbjct: 72  RMFFEFCQDSGYDKILQVLGATPRDFLQNLDAL 104


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 101 RVDARFLSESGIVDMFVLMGSTPGDAFRQYTAL 199
           R+   F  +SG   +  ++G+TP D  +   AL
Sbjct: 72  RMFFEFCQDSGYDKILQVLGATPRDFLQNLDAL 104


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 177 RSGSTPRSPG 206
           RS  TPRSPG
Sbjct: 908 RSNVTPRSPG 917


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 165 PPGTRSGSTPRSPGPRR 215
           PP     S PR PG  R
Sbjct: 130 PPSVSLSSPPREPGTPR 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,939
Number of Sequences: 438
Number of extensions: 3518
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)