Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20836
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ... 99 2e-21
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si... 48 4e-06
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil... 42 2e-04
At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t... 41 4e-04
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al... 39 0.002
At3g14300.1 68416.m01809 pectinesterase family protein contains ... 33 0.15
At3g03440.1 68416.m00342 armadillo/beta-catenin repeat family pr... 31 0.60
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ... 30 1.1
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ... 30 1.1
At4g15320.1 68417.m02344 cellulose synthase family protein simil... 29 1.4
At1g61490.1 68414.m06928 S-locus protein kinase, putative simila... 29 1.4
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 1.8
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 1.8
At5g54360.1 68418.m06769 zinc finger (C2H2 type) family protein-... 29 2.4
At1g32950.1 68414.m04058 subtilase family protein contains simil... 29 2.4
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 29 2.4
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 29 2.4
At5g17290.1 68418.m02025 autophagy protein Apg5 family contains ... 28 3.2
At4g25310.1 68417.m03640 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 4.2
At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical... 28 4.2
At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside h... 27 5.6
At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH) domain... 27 7.4
At3g01910.1 68416.m00139 sulfite oxidase, putative similar to su... 27 7.4
At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR... 27 9.8
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 27 9.8
At4g26450.1 68417.m03805 expressed protein 27 9.8
At3g24550.1 68416.m03083 protein kinase family protein contains ... 27 9.8
At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family pro... 27 9.8
>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
alpha-glucosidase GI:2648032 from [Solanum tuberosum]
Length = 921
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/66 (66%), Positives = 47/66 (71%)
Frame = +1
Query: 256 NYMDEADVRSVDENFDVHDIPMDSIWLDIEYTNKKMYFTWDVVKFPHPAEMVANLTAKGR 435
NY DE DV VD FD HDIP D +WLDIE+T+ K YFTWD V FPHP EM L AKGR
Sbjct: 372 NYKDEEDVAQVDSKFDEHDIPYDVLWLDIEHTDGKRYFTWDSVLFPHPEEMQKKLAAKGR 431
Query: 436 KMVVIV 453
KMV IV
Sbjct: 432 KMVTIV 437
Score = 67.3 bits (157), Expect = 6e-12
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +2
Query: 2 WHNSAETWIDVVNYGEGNVVSSLVNLVTGGQKKRVDARFLSESGIVDMFVLMGSTPGDAF 181
W N+AE IDV+ G S ++L + R+D ++SE+GIVD F +G P D
Sbjct: 291 WLNAAEMQIDVL--ANGWDAESGISLPSS--HSRIDTFWMSEAGIVDTFFFVGPEPKDVV 346
Query: 182 RQYTALTGTTPLPPKFSLGYHQC 250
+QY ++TGT+ +P F+ GYHQC
Sbjct: 347 KQYASVTGTSAMPQLFATGYHQC 369
>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
thermoamyloliquefaciens]; contains Pfam profile: PF01055
Glycosyl hydrolases family 31
Length = 991
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 256 NYMDEADVRSVDENFDVHDIPMDSIWLDIEYTNKKMYFTWDVVKFPHPAEMVANLTAKGR 435
+YM + V + + F IP D IW+DI+Y + FT+D +FP P+ + +L + G
Sbjct: 208 SYMSDKRVAEIAQTFRDKKIPSDVIWMDIDYMDGFRCFTFDKERFPDPSALAKDLHSNGF 267
Query: 436 KMV 444
K +
Sbjct: 268 KAI 270
Score = 33.5 bits (73), Expect = 0.085
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 161 STPGDAFRQYTALTGTTPLPPKFSLGYHQC 250
S+P + GT +PPK++LGYHQC
Sbjct: 176 SSPTAVLESLSHAIGTVFMPPKWALGYHQC 205
>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
similarity to alpha-xylosidase precursor GI:4163997 from
[Arabidopsis thaliana]
Length = 868
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 YMDEADVRSVDENFDVHDIPMDSIWLDIEYTNKKMYFTWDVVKFPHP--AEMVANLTAKG 432
Y + + V+ V +N+ IP+D IW D +Y + FT D+V FPH + + G
Sbjct: 299 YRNVSVVKDVVDNYQKAKIPLDVIWNDADYMDGYKDFTLDLVNFPHAKLLSFLDRIHKMG 358
Query: 433 RKMVVI 450
K VVI
Sbjct: 359 MKYVVI 364
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 131 GIVDMFVLMGSTPGDAFRQYTALTGTTPLPPKFSLGYHQC 250
G+ D + G +P + QYT+L G P +SLG+HQC
Sbjct: 256 GVFDFYFFAGPSPLNVVDQYTSLIGRPAPMPYWSLGFHQC 295
>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
Length = 902
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 131 GIVDMFVLMGSTPGDAFRQYTALTGTTPLPPKFSLGYHQC 250
G++D++V G +P QYT L G P +S G+HQC
Sbjct: 278 GVIDLYVFAGPSPEMVMNQYTELIGRPAPMPYWSFGFHQC 317
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 259 YMDEADVRSVDENFDVHDIPMDSIWLDIEYTNKKMYFTWDVVKFPHP--AEMVANLTAKG 432
Y + +D+ V + + IP++ +W DI+Y + FT D V FP V L G
Sbjct: 321 YKNVSDLEYVVDGYAKAGIPLEVMWTDIDYMDGYKDFTLDPVNFPEDKMQSFVDTLHKNG 380
Query: 433 RKMVVIV 453
+K V+I+
Sbjct: 381 QKYVLIL 387
>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
[Arabidopsis thaliana]; contains Pfam profile PF01055:
Glycosyl hydrolases family 31; identical to cDNA
alpha-xylosidase precursor (XYL1) partial cds GI:4163996
Length = 915
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 131 GIVDMFVLMGSTPGDAFRQYTALTGTTPLPPKFSLGYHQC 250
G+ D + + G +P + QYT L G P +SLG+HQC
Sbjct: 259 GVFDFYFIAGPSPLNVVDQYTQLIGRPAPMPYWSLGFHQC 298
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 259 YMDEADVRSVDENFDVHDIPMDSIWLDIEYTNKKMYFTWDVVKFPHPAEMVANL 420
Y + + V V +N+ IP+D IW D ++ + FT + V +P A+++A L
Sbjct: 302 YHNLSVVEDVVDNYKKAKIPLDVIWNDDDHMDGHKDFTLNPVAYPR-AKLLAFL 354
>At3g14300.1 68416.m01809 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 968
Score = 32.7 bits (71), Expect = 0.15
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 207 VPVSAVYCRNASPGVEPISTNMSTMPDSLRNLAS-TRF--FC-PPVTRLTSDETTFPSP* 40
+P+ N+SP PIS T SLRN+ S TR+ C +++L S TT P
Sbjct: 243 IPIHGRRLLNSSPHATPISVPKLTPAASLRNVCSVTRYPASCVSSISKLPSSNTTDPEAL 302
Query: 39 LTTSIQV 19
S+QV
Sbjct: 303 FRLSLQV 309
>At3g03440.1 68416.m00342 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 408
Score = 30.7 bits (66), Expect = 0.60
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -1
Query: 222 GGSGVVPVSAVYCRNASPGVEPIS----TNMSTMPDSLRNLASTRFFCPPVTRLTSDE 61
G +GVVP+ ++ SP + + +N+ST+PD+L + +T+ P + L S +
Sbjct: 185 GANGVVPLLVKVIKHGSPQAKADAVMALSNLSTLPDNLSMILATKPLSPILNLLKSSK 242
>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 126 SPASWTCSC*WAPPPGTRSGSTPRSP 203
SP +W S W P P + SGS P SP
Sbjct: 322 SPGAWN-SFTWMPQPNSPSGSNPNSP 346
>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 126 SPASWTCSC*WAPPPGTRSGSTPRSP 203
SP +W S W P P + SGS P SP
Sbjct: 322 SPGAWN-SFTWMPQPNSPSGSNPNSP 346
>At4g15320.1 68417.m02344 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -2
[gi:9622876], -1 [gi:9622874]
Length = 828
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +3
Query: 138 WTCSC*WAPPPGTRSGSTPRSPGPRRCRQNSRWATTS 248
WT S +P P GSTP S GP Q+ RWAT S
Sbjct: 561 WTSSF-ISPDPPAFLGSTP-SVGPEAIVQHRRWATGS 595
>At1g61490.1 68414.m06928 S-locus protein kinase, putative similar
to KI domain interacting kinase 1 [Zea mays]
gi|2735017|gb|AAB93834; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 804
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 262 MDEADVRSVDENFDVHD---IPMDSIWLDIEYTNKKMYFTWDVVKFPHPAEMVANLTAKG 432
+D A R++ E+F+ +P S+ ++ K++ +W P P V +T +
Sbjct: 132 IDNASGRTLWESFEHFGDTMLPFSSLMYNLATGEKRVLTSWKTDTDPSPGVFVGQITPQV 191
Query: 433 RKMVVIV-GSAHQTRTWIFSYTR 498
V+I+ GS RT ++ TR
Sbjct: 192 PSQVLIMRGSTRYYRTGPWAKTR 214
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/62 (38%), Positives = 29/62 (46%)
Frame = +3
Query: 48 KGTWSRRSSTWSPGDRRNASMQGS*ASPASWTCSC*WAPPPGTRSGSTPRSPGPRRCRQN 227
+G RS + S R+ + S SPA T + PG RS S RSP PRR R
Sbjct: 218 RGRSVSRSRSRSRSRSRSPKAKSSRRSPAKST-----SRSPGPRSKS--RSPSPRRSRSR 270
Query: 228 SR 233
SR
Sbjct: 271 SR 272
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/62 (38%), Positives = 29/62 (46%)
Frame = +3
Query: 48 KGTWSRRSSTWSPGDRRNASMQGS*ASPASWTCSC*WAPPPGTRSGSTPRSPGPRRCRQN 227
+G RS + S R+ + S SPA T + PG RS S RSP PRR R
Sbjct: 218 RGRSVSRSRSRSRSRSRSPKAKSSRRSPAKST-----SRSPGPRSKS--RSPSPRRSRSR 270
Query: 228 SR 233
SR
Sbjct: 271 SR 272
>At5g54360.1 68418.m06769 zinc finger (C2H2 type) family
protein-related contains Prosite:PS00028: Zinc finger,
C2H2 type, domain.
Length = 270
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 115 PCIDAFLLSPGDQVDERRDHVP-FPVVD 35
PC+ + L G+QVD HVP +P D
Sbjct: 190 PCVPRYSLVAGNQVDSSNIHVPAYPTTD 217
>At1g32950.1 68414.m04058 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 773
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 270 LVHVVQRHWW*PSENFGGSGVVPVSAVYCRNASPGVEPISTN 145
++ V+ W SE+F GV PV + + PG ISTN
Sbjct: 137 IIGVIDTGVWPESESFNDYGVGPVPSHWKGGCEPGENFISTN 178
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 6 TTPPRPGSMWSTTGKGTWSRRSSTWSPGDRRNASMQGS*ASPA 134
T PP P ++ +T + WS R T +PG R S S +PA
Sbjct: 552 TMPPPPINVRNTIDRADWSNRQPTTTPG-RTPTSATPSGRTPA 593
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 6 TTPPRPGSMWSTTGKGTWSRRSSTWSPGDRRNASMQGS*ASPA 134
T PP P ++ +T + WS R T +PG R S S +PA
Sbjct: 552 TMPPPPINVRNTIDRADWSNRQPTTTPG-RTPTSATPSGRTPA 593
>At5g17290.1 68418.m02025 autophagy protein Apg5 family contains
Pfam profile: PF04106 autophagy protein Apg5
Length = 337
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 277 VRSVDENFD-VHDIPMDSIWLDIEYTNKKMYF 369
VRS++++F+ + D+P W DI Y N+ + F
Sbjct: 215 VRSLNKDFENLEDVPEIDTWDDISYLNRPVEF 246
>At4g25310.1 68417.m03640 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase [Petunia x
hybrida][GI:311658], [Solanum tuberosum][GI:1039356];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 353
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 190 VLPERVPGGGAHQHEHVHDAGLAQEPCIDAFLLSPGDQVDERRDHVPF 47
VLP R + E D+G Q P ID LLS +D D + F
Sbjct: 28 VLPPRYVRSDQEKGEAAIDSGENQIPIIDMSLLSSSTSMDSEIDKLDF 75
>At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical to
ethylene-insensitive3 GI:2224933 from [Arabidopsis
thaliana]
Length = 628
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/50 (24%), Positives = 20/50 (40%)
Frame = -1
Query: 252 RHWW*PSENFGGSGVVPVSAVYCRNASPGVEPISTNMSTMPDSLRNLAST 103
R WW F +G ++ N PG+ + + P +L+ L T
Sbjct: 135 REWWKDKVRFDRNGPAAITKYQAENNIPGIHEGNNPIGPTPHTLQELQDT 184
>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside
hydrolase family protein contains Pfam profile PF01156:
Inosine-uridine preferring nucleoside hydrolase
Length = 890
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 333 AGHRVHQQEDVLH-VGRGQVP-SSGGNGGQPD 422
AGH V+Q D+LH + R +P GG GG D
Sbjct: 74 AGHAVNQVYDLLHMMDRDDIPVGVGGEGGISD 105
>At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to Chain A,
Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
(GP:13399999) {Homo sapiens}; supporting cDNA
gi|26451912|dbj|AK118440.1|
Length = 611
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +3
Query: 378 RGQVPSSGGNGGQPDGQRKEDGCHRGIRTSN 470
RG+ S GG GG DG E+ HRG TSN
Sbjct: 160 RGKKKSGGGGGG--DGDSGEEDDHRG--TSN 186
>At3g01910.1 68416.m00139 sulfite oxidase, putative similar to
sulfite oxidase GB:3212610 SP|P07850 [Gallus gallus],
Moco containing protein [Oryza sativa (japonica
cultivar-group)] GI:22759584; contains Pfam profiles:
PF00174: Oxidoreductase molybdopterin binding domain and
PF03404: Mo-co oxidoreductase dimerisation domain
Length = 393
Score = 27.1 bits (57), Expect = 7.4
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 211 RGPGERGVLPERVPGGGAHQHEHVHDAGLAQEPCIDAFLLSPGDQVD--ERRDHVPFPVV 38
RGP E P R P + E + EP A + S VD +R+H P P+V
Sbjct: 5 RGPSEYSQEPPRHPSLKVNAKEPFN-----AEPPRSALVSSYVTPVDLFYKRNHGPIPIV 59
Query: 37 DHI 29
DH+
Sbjct: 60 DHL 62
>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 900
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 157 HQHEHVHDAGLAQEPCIDAFLLSPGDQVDE 68
H+H +HD GL +E D +L D VD+
Sbjct: 273 HKHMKIHDLGLVKERLQDLKVLVVLDDVDK 302
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 6 TTPPRPGSMWSTTGKGTW-SRRSSTWSPGDRRNASMQGS 119
T+ +P S TTG T S+RSS+W G+ + +GS
Sbjct: 519 TSAEKPAS--KTTGSSTVNSKRSSSWGRGNGKKTPAKGS 555
>At4g26450.1 68417.m03805 expressed protein
Length = 1248
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 342 RVHQQEDVLHVGRGQVPS-SGGNGGQPDGQRK-EDG-CHRGIRTSNANLD 482
+V + L G G++ SGGNGG+ + Q EDG H+ R +A++D
Sbjct: 261 KVSEGSSSLSAGSGEMKGRSGGNGGEDENQTAIEDGSIHQ--RCEDASID 308
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 165 PPGTRSGSTPRSP 203
PP T SGSTPR+P
Sbjct: 109 PPNTPSGSTPRTP 121
>At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family
protein similar to carbamoylphosphate synthetase
GI:6552726 from [Medicago sativa]; contains Pfam
profiles PF02786: Carbamoyl-phosphate synthase L chain
ATP binding domain, PF00289: Carbamoyl-phosphate
synthase L chain N-terminal domain, PF02787:
Carbamoyl-phosphate synthetase large chain
oligomerisation domain
Length = 1187
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 198 SAVYCRNASPGVEPISTNMSTMPDSLRNLASTRFFCPPVTRLTSDETTFP 49
SA+Y R+ P S++ ST P L +S PV+ L +D TT P
Sbjct: 39 SAIYYRS-KPKQASSSSSFSTFPPCLNRKSSLTHVLKPVSEL-ADTTTKP 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,306
Number of Sequences: 28952
Number of extensions: 273810
Number of successful extensions: 1142
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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