Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20835
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   3.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    20   6.3  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    20   6.3  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    20   6.3  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = +2

Query: 134 KMLQSKLLIKSCQEDLERRCMKI 202
           +MLQ   ++K  +++L ++C+++
Sbjct: 390 EMLQQNKILKVIRKNLVKKCLEL 412


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 43  ISINCTVIINSYPEN-ECNLDNKLVDE 120
           +S+ CTV    YP N    L+   +D+
Sbjct: 621 VSVQCTVSKGDYPLNISWTLNGHFIDQ 647



 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 257 FRALLPAKRAPNVSMDLE*SSYIFVPNPPDTI 162
           FRA++        S + + S  +FV  PP+ I
Sbjct: 2   FRAIIVTLLVLGASAEDDTSGPVFVREPPNRI 33


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory
          receptor candidate 46 protein.
          Length = 1451

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +1

Query: 10 MYSIVLQILFL 42
          +Y+I+LQ+LF+
Sbjct: 44 LYNIILQVLFV 54


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 202 NLHTSSFQILLTRFYQ 155
           +LHTS + I    FYQ
Sbjct: 172 DLHTSIYIIFFDMFYQ 187


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory
          receptor candidate 3 protein.
          Length = 398

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +1

Query: 10 MYSIVLQILFL 42
          +Y+I+LQ+LF+
Sbjct: 62 LYNIILQVLFV 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,269
Number of Sequences: 336
Number of extensions: 1811
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)