Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20835
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   1.9  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   3.4  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   4.4  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    24   5.9  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 133 KNVTKQIIDKIVSGGFGTKMYEDYSKSID 219
           KN  K+ I  I +GG   K Y+  SK +D
Sbjct: 127 KNCNKKKITLIATGGGAYKFYDRMSKQLD 155


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = -2

Query: 191 IFVPNPPDTILSIICFVTFLYDCISSTN-----LLSKLHSFSG*LFI--ITVQLIEIKNN 33
           +FV  PP  ILS   ++  L DC+ S +     L S L   S  L +  + V L + +N 
Sbjct: 357 LFVVIPPAIILSFDSYLDSLNDCLLSESTHTGVLCSSLKLLSKFLDVTHMNVPLSKYENI 416

Query: 32  ICKTIEYI 9
           +   +EY+
Sbjct: 417 VTLVLEYL 424


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 95  LHSFSG*LFIITVQLIEIKNNICKTIEYI 9
           L SFSG   +  ++++++ NN+ K + Y+
Sbjct: 227 LTSFSGIEVLENLEILDVSNNMIKHLSYL 255


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
 Frame = +1

Query: 28  QILFLISINCTVIINSYPENECNLDNKLVDEIQSYKNV-------TKQIIDKIVSGGFGT 186
           +I F  S NC  +    P +ECN +    D+   YK +         +IID +  G FG 
Sbjct: 473 KIYFTGSENCQKLSKQIPLDECN-EALFDDDNGDYKAIQGDHLLYRYEIIDTVGKGSFGQ 531

Query: 187 KMYEDYSKSIDTXGARLAGSKALK 258
            +     K ID    ++   K +K
Sbjct: 532 VL-----KCIDHKRGQVVAIKVIK 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,117
Number of Sequences: 5004
Number of extensions: 27417
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)