Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20835
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0689 + 22160627-22160720,22161331-22161425,22161679-221618... 28 1.8
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770... 27 3.1
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 27 4.0
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 27 5.3
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 27 5.3
12_02_1003 - 25183468-25184010,25184295-25184551,25184795-251849... 26 7.1
12_02_0777 + 23070338-23070452,23071336-23071967 26 7.1
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 26 7.1
11_03_0064 + 9518810-9519164,9519533-9520359 26 7.1
10_07_0179 - 13860745-13861571,13861940-13862294 26 7.1
04_03_0647 + 18367321-18367675,18368044-18368885 26 7.1
03_02_0038 + 5200344-5200365,5200579-5201150 26 7.1
02_05_0281 + 27441661-27441846,27442919-27443067,27445599-27445737 26 7.1
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196 26 7.1
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 26 9.3
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119... 26 9.3
>12_02_0689 +
22160627-22160720,22161331-22161425,22161679-22161822,
22162256-22162513,22162595-22162666,22162759-22162824,
22163212-22163346,22163562-22163697,22163807-22163983,
22164086-22164192,22164281-22164421,22164604-22164740,
22164823-22165076,22165158-22165300,22165423-22165581,
22166049-22166461,22167369-22167474
Length = 878
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 64 IINSYPENECNLDNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYE 198
+I Y E+ + NK+ +E Q+ N+T+Q+ +V+G K ++
Sbjct: 230 VIQEY-EHRIAIQNKMDEEEQNLLNITEQVNHVVVNGDGEVKQFQ 273
>03_06_0691 +
35576319-35576702,35576803-35576885,35576972-35577012,
35577974-35578018,35578217-35578371,35579116-35579265,
35579386-35579481,35579738-35579854,35579969-35580088,
35580170-35580262,35580351-35580467,35580815-35580931,
35581089-35581151,35581238-35581399
Length = 580
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 213 HRYIXSTFGGKQSSEKAIDHMVNLTRQNGLN 305
HR I S G Q S ++ N+ R+NG+N
Sbjct: 487 HRSIISLIGNVQRSSLILEKAFNVLRRNGVN 517
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 94 NLDNKLVDEIQSYKNVTKQIIDKIVS 171
+L NKL DE++++ ++KQ+ +K +S
Sbjct: 734 SLKNKLDDEVEAHNKLSKQVREKSLS 759
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 107 LLSKLHSFSG*LFIITVQLIEIKNNICKTIE 15
LLS H+ +F++T +E + NIC+T++
Sbjct: 422 LLSNSHNALPQIFLVTDGSVEDERNICRTVK 452
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 249 SSEKAIDHMVNLTRQNGLNDXTTEEV 326
SSE+ + V T +N L D TTEE+
Sbjct: 315 SSEELVQDDVKSTSENSLEDSTTEEL 340
>12_02_1003 -
25183468-25184010,25184295-25184551,25184795-25184971,
25185438-25185905,25186720-25186730,25187589-25187599
Length = 488
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 316 DGKLPGVYVSFEEIVAQKIDAKLIGGISWKKYKDIDEAL 354
>12_02_0777 + 23070338-23070452,23071336-23071967
Length = 248
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 141 DGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEAL 179
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 713 DGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEAL 751
>11_03_0064 + 9518810-9519164,9519533-9520359
Length = 393
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 221 DGKLPGVYISFEEIVAQKIDTKLMGGISWKKYKDIDEAL 259
>10_07_0179 - 13860745-13861571,13861940-13862294
Length = 393
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 221 DGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEAL 259
>04_03_0647 + 18367321-18367675,18368044-18368885
Length = 398
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 221 DGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEAL 259
>03_02_0038 + 5200344-5200365,5200579-5201150
Length = 197
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 25 DGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEAL 63
>02_05_0281 + 27441661-27441846,27442919-27443067,27445599-27445737
Length = 157
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 275 GKFDTTKWLERXDNGRSLT 331
G ++T W E+ DNG+ LT
Sbjct: 81 GMYNTLTWWEQMDNGKQLT 99
>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
Length = 933
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 761 DGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEAL 799
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 100 DNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSI 216
D KL S++ + Q ID + GG K Y+D +++
Sbjct: 870 DGKLPGVYISFEEIVAQKIDAKLLGGISWKKYKDIDEAL 908
>04_03_0331 +
14510848-14511124,14511139-14511528,14511708-14511997,
14512080-14512154,14512194-14512409,14512727-14512795,
14512941-14513891
Length = 755
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 302 QAILSCQIYHVIYSFFRALLPA----KRAPNVSMDLE*SSYIFVPNPPDTILSIIC 147
Q +++C + +I++F A P R N +M +++F PP T+L I+C
Sbjct: 656 QNVMACCDFDMIFTFVLARCPGFMHDMRVFNDAMSTY--NHVFPHPPPGTLLPILC 709
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,303
Number of Sequences: 37544
Number of extensions: 149517
Number of successful extensions: 314
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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