Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20835
(348 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.064
SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57) 28 1.8
SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33) 28 1.8
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11) 28 1.8
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33) 28 1.8
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 28 2.4
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
>SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 33.1 bits (72), Expect = 0.064
Identities = 21/88 (23%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = +1
Query: 13 YSIVLQILFLISI-NCT---VIINSYPENECNLD--NKLVDEIQSYKNVTKQIIDKIVSG 174
YS++ ++F++S+ NC + + N+ + + + EIQ +K++ +I +++G
Sbjct: 10 YSLI-SVIFILSLENCLGKPLDRDGKTRNDIHFEIPESIRKEIQDHKSIANDVITFVLNG 68
Query: 175 GFGTKMYEDYSKSIDTXGARLAGSKALK 258
++Y + D G+R+AGS+ L+
Sbjct: 69 PAKHQVYNRLADFTDRFGSRIAGSQNLE 96
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 228 STFGGKQSSEKAIDHMVNLTRQNGLNDXTTEEV 326
S G Q+ E AID+M+N +++GL + EEV
Sbjct: 87 SRIAGSQNLENAIDYMLNALKKDGLENVHGEEV 119
>SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)
Length = 427
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 248 LLPAKRAPNVSMDLE*SSYIF---VPNPPDTILSIICFVTFLYD 126
+LPA+R+ V DLE ++ F VP P T ++ V +YD
Sbjct: 361 VLPAQRSLGVYWDLETDAFTFKVTVPEKPFTRRGVLSIVNSVYD 404
>SB_46290| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
Length = 1019
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 248 LLPAKRAPNVSMDLE*SSYIF---VPNPPDTILSIICFVTFLYD 126
+LPA+R+ V DLE ++ F VP P T ++ V +YD
Sbjct: 422 VLPAQRSLGVYWDLETDAFTFKVTVPEKPFTRRGVLSIVNSVYD 465
>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
Length = 1170
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 248 LLPAKRAPNVSMDLE*SSYIF---VPNPPDTILSIICFVTFLYD 126
+LPA+R+ V DLE ++ F VP P T ++ V +YD
Sbjct: 647 VLPAQRSLGVYWDLETDAFTFKVTVPEKPFTRRGVLSIVNSVYD 690
>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
Length = 1584
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 248 LLPAKRAPNVSMDLE*SSYIF---VPNPPDTILSIICFVTFLYD 126
+LPA+R+ V DLE ++ F VP P T ++ V +YD
Sbjct: 814 VLPAQRSLGVYWDLETDAFTFKVTVPEKPFTRRGVLSIVNSVYD 857
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 27.9 bits (59), Expect = 2.4
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 52 NCTVIINSYPENECNLDNKLVD-EIQSYKNVTKQIIDKIVSGGFGTKM 192
NC+V+ +Y ENECN +D + + N ++ DK S G GTKM
Sbjct: 597 NCSVLGPAYEENECNTVPCPIDGGLTPWSNYSQ--CDK--SCGMGTKM 640
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 13 YSIVLQILFLISINCTVIINSYPENECNLDNKLVDEIQSY 132
YS + F INC + IN N C + +D I SY
Sbjct: 725 YSCACAVGFT-GINCEININDCASNPCAAYQRCIDRIDSY 763
>SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -2
Query: 245 LPAKRAPNVSMDLE*SSYIFVPNPPDTILS---IICFVTFLYD 126
LPA+R+ V +L+ S+ + +PPDT + ++ V +YD
Sbjct: 814 LPAQRSLGVYWELQSDSFAYRVSPPDTPFTRRGVLSVVNSVYD 856
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 255 EKAIDHMVNLTRQNGLNDXTTEEV*HTILA 344
E DH++ + R + + TTEEV H I A
Sbjct: 692 EDEADHLMQVVRYSEVKPLTTEEVQHLIAA 721
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 275 GKFDTTKWLERXDNGRSLTY 334
G F T+ WLER + + LTY
Sbjct: 423 GAFCTSPWLERLEGPKDLTY 442
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 79 PENECNLDNKLVDEIQSYKNVTKQIIDKIVSGGFGT 186
P N+C+ DNKL +E+ K ++ ++ S T
Sbjct: 2523 PANDCDEDNKLKNELMLAKEQLVRLKSELTSSNIQT 2558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,393,475
Number of Sequences: 59808
Number of extensions: 180816
Number of successful extensions: 504
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -