Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20835
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68219-5|CAJ43449.1|  343|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z68219-4|CAA92482.2|  359|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81545-5|CAB04440.1|  389|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z77134-5|CAE17935.1|   94|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U29244-2|AAC71086.1|  334|Caenorhabditis elegans Hypothetical pr...    26   8.5  
L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    26   8.5  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      26   8.5  

>Z68219-5|CAJ43449.1|  343|Caenorhabditis elegans Hypothetical
           protein T05A1.5b protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 25  LQILFLISINCTVIINSY--PENECNLDNKLVDEIQSYKNVTKQIID 159
           +  L+L+S+  T+   SY  P + C LDN     +Q+  N+TK +ID
Sbjct: 74  MAFLWLLSVMPTMS-PSYMAPSSPCTLDNCSFVTVQNEFNITKTLID 119


>Z68219-4|CAA92482.2|  359|Caenorhabditis elegans Hypothetical
           protein T05A1.5a protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 25  LQILFLISINCTVIINSY--PENECNLDNKLVDEIQSYKNVTKQIID 159
           +  L+L+S+  T+   SY  P + C LDN     +Q+  N+TK +ID
Sbjct: 90  MAFLWLLSVMPTMS-PSYMAPSSPCTLDNCSFVTVQNEFNITKTLID 135


>Z81545-5|CAB04440.1|  389|Caenorhabditis elegans Hypothetical
           protein F49H6.5 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +1

Query: 67  INSYPENECNLDNKL---VD---EIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSIDTXG 228
           I S  ++ CN  N+L    D   ++  + N    + D+I  G    K+ E    ++D   
Sbjct: 308 ITSMSDHFCNTCNRLRITADGNLKVCLHGNSEVSLRDRIRCGDSDAKLSEVIQTAVDNKK 367

Query: 229 ARLAGSKALKKL 264
           AR AG  ALK L
Sbjct: 368 ARHAGMDALKNL 379


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 70  NSYPENECNLDNKLVDEIQSYKNVTKQIIDKIV-SGGFGTKMYEDYSKSIDT 222
           N+ P+ +     K++DE   ++  TK++I +++   G  T   +D  +S++T
Sbjct: 233 NNNPDKQKEELLKMIDEKTKFEAKTKEMIRRLIEENGETTSRLKDMERSLET 284


>Z77134-5|CAE17935.1|   94|Caenorhabditis elegans Hypothetical
           protein R09H10.7 protein.
          Length = 94

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +1

Query: 1   RINMYSIVLQILFLISINCTVIINSYPENECNLDNKLVDEIQS 129
           ++ MYSI+  +LF++ +  T+I++         +  L D++++
Sbjct: 31  KLKMYSIMFFVLFILFLITTIIVSVILGINIKTEQNLEDQLEA 73


>U29244-2|AAC71086.1|  334|Caenorhabditis elegans Hypothetical
           protein ZK1248.5 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 67  INSYPENECNLDNKLVDEIQSYKNVTKQIIDKI 165
           I+ YP  EC +     D+I+  + + K I++++
Sbjct: 236 ISVYPSGECAITPMYADDIRIARTILKNILEEM 268


>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 173 PDTILSIICFVTFLYDCISSTNLLSKLHSFSG*LFI 66
           P  +++ +  +TF  D +SST LL  LH +   +F+
Sbjct: 288 PCIVVASLISMTFFIDSLSSTFLLMMLHFYVQLIFL 323


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 173 PDTILSIICFVTFLYDCISSTNLLSKLHSFSG*LFI 66
           P  +++ +  +TF  D +SST LL  LH +   +F+
Sbjct: 288 PCIVVASLISMTFFIDSLSSTFLLMMLHFYVQLIFL 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,022,287
Number of Sequences: 27780
Number of extensions: 152127
Number of successful extensions: 456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)