Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20835
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 301 KPFCRVKFTM*SIAFSELCFPPNVL 227
           KPF  V+     IAFSE C P  +L
Sbjct: 422 KPFVYVR----EIAFSESCLPEEIL 442


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 19  IVLQILFLISINCTVIINSYPENECNLDNKLVDEIQSYKN 138
           + + +L +I I  TV+I     +ECN       +   Y+N
Sbjct: 539 VAVVVLLVIIIIMTVLILRRASDECNKKQPSDCDTLEYRN 578


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 49  INCTVIINSYPENECNLDNKLVDEIQSYKNVTKQIIDKIVS 171
           INC+ I+  +  N   L      ++  Y N   Q I+K ++
Sbjct: 282 INCSDILEEFERNRLQLLESFKRKVNFYPN--NQDIEKFLN 320


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 347 RCQYGMSNFFRCXVVQ 300
           +C+YG++    C +VQ
Sbjct: 45  KCKYGIAMSSACGIVQ 60


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 96  ITFILRITIYYHGTV 52
           +T + + T+YY G V
Sbjct: 127 VTLMTKATVYYSGLV 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,082
Number of Sequences: 438
Number of extensions: 1703
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)