Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20835
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17680.1 68416.m02257 expressed protein similar to GB:AAD4975...    27   4.5  
At3g57140.2 68416.m06362 patatin-related contains Patatin domain...    26   6.0  
At3g57140.1 68416.m06361 patatin-related contains Patatin domain...    26   6.0  
At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    26   6.0  
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH...    26   7.9  
At4g02405.1 68417.m00325 expressed protein                             26   7.9  
At1g55325.1 68414.m06320 expressed protein                             26   7.9  
At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family...    26   7.9  

>At3g17680.1 68416.m02257 expressed protein similar to GB:AAD49756
           from [Arabidopsis thaliana]
          Length = 313

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 91  CNLDNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDYSKSIDTXGARLAGSKALKKL 264
           C L N++   +Q+ +N ++ + DK+  G FG   ++   K  +    +  G K LKKL
Sbjct: 231 CILQNRIYS-LQASRN-SEPVSDKVSYGCFGLDKHKTKKKKENKTEEKKPGFKWLKKL 286


>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 133 CMIVFHQPTYCLNYIHSP 80
           C +  H+P  CLNY+ SP
Sbjct: 351 CSLRKHEPPRCLNYLTSP 368


>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 133 CMIVFHQPTYCLNYIHSP 80
           C +  H+P  CLNY+ SP
Sbjct: 351 CSLRKHEPPRCLNYLTSP 368


>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 133 KNVTKQIIDKIVSGGFGTKMYEDYSKSIDTXGARLAG 243
           +N TK   DK+  GGFG+        S D    RL G
Sbjct: 489 QNATKNFSDKLGGGGFGSVFKGALPDSSDIAVKRLEG 525


>At5g15250.1 68418.m01786 FtsH protease, putative similar to
           FtsH-like protein Pftf precursor GI:4325041 from
           [Nicotiana tabacum]
          Length = 687

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 154 IDKIVSGGFGTKMYEDYSKSI 216
           ID+IV+G  GTKM +  SK+I
Sbjct: 460 IDRIVAGMEGTKMIDGKSKAI 480


>At4g02405.1 68417.m00325 expressed protein
          Length = 333

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 67  INSYPENECNLDNKLVDEIQSYKNVTKQIIDKIVSGGFGTKM--YEDYSKSI 216
           I+S   NEC L  +L   I    +++K +    +S GF  K+  YE+ + S+
Sbjct: 233 ISSLAMNECYLIGELPTNITLQSDLSKWMEKLFMSNGFRVKIVSYEEIAASL 284


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 67   INSYPENECNLDNKLVDEIQSYKNVTKQIIDKIVSGGFGTKMYEDY 204
            IN   E    L   L+D    Y N   +I+  IV  G GTK   D+
Sbjct: 1812 INVKEEWPSVLSVSLIDYYGGYDNAHDKILQGIVKQGGGTKETRDF 1857


>At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 144

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 7/39 (17%), Positives = 21/39 (53%)
 Frame = +1

Query: 19  IVLQILFLISINCTVIINSYPENECNLDNKLVDEIQSYK 135
           ++  ++ +  + C  +IN    ++ +L+ + +DE+   K
Sbjct: 12  VIFTVMMIALLTCPTLINGSSSSDASLEARKLDEVDPIK 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,298,563
Number of Sequences: 28952
Number of extensions: 131311
Number of successful extensions: 337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)