Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20834
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    28   0.095
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    27   0.13 
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   4.7  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.2  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 67  ALRSICTKCQRNSLERIAKL*QLDSAKKMLNWKKIKKQ 180
           AL S CTKC +   E   K+ +  + K+  +W+++ K+
Sbjct: 69  ALSSGCTKCNQKQKETAEKVIRHLTQKRARDWERLSKK 106


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 25  CTSHID*LVFI*YLALRSICTKCQRNSLERIAKL*QLDSAKKMLNWKKI 171
           CT   D L  +   AL+S C KC     E   K+    S  K   WK++
Sbjct: 51  CTPDADELKRVLPDALKSDCAKCSEKQKEMTKKVIHFLSHNKQQMWKEL 99


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 67  ALRSICTKCQRNSLERIAKL*QLDSAKKMLNWKKIKKQ 180
           AL++ C KC     E I K+      +K   W++++K+
Sbjct: 65  ALKNECAKCNDKHKEGIRKVIHYLVKQKPEWWEQLQKK 102


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDNDD 221
           E S   A  ++KE    +KD K K  +ED   ++++D
Sbjct: 222 ELSDDEAEEEKKEEEGEDKD-KDKPKIEDVGEDEDED 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,844
Number of Sequences: 336
Number of extensions: 2347
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)