Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20834
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    52   7e-08
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   3.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.9  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   6.9  

>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +1

Query: 505 SKTVDEALAILS-----DKPEVDRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXX 669
           ++ +D+AL +LS      K ++DRHPE+R KAA T ++Q  LP L+   P          
Sbjct: 104 ARNIDDALDLLSLNNSSSKDKIDRHPERRFKAALTEYKQSRLPELRKEQPGLRLNQYEDI 163

Query: 670 XXXXWHKSPQNPLNQ 714
               + K P NP N+
Sbjct: 164 MYKEFQKHPDNPFNK 178


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 569 KNDLKQPSQ-PLNKSICHVLKPGTL 640
           KN L+QP Q P+  SIC +  PG+L
Sbjct: 12  KNWLRQPDQQPIQDSICTLPGPGSL 36


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 48  SFYLVPRTSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTK 182
           +FY+  + +   H  P+K T         R+RK+  + + +++ K
Sbjct: 140 AFYIAQQVAAIEHPPPRKMTSSEKTRSENRERKKRWREQNEERNK 184


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 466 RRKSKQDTVRW*ISKTVDEALAILSDKPEVDRHPEKRLKAAF 591
           + K KQDT++W IS  V+E    L  + E+     + LKA F
Sbjct: 106 KEKEKQDTIQW-ISNAVEE----LERQAELIEAEAESLKATF 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,862
Number of Sequences: 5004
Number of extensions: 40882
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)