Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20834
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896...    62   5e-10
03_01_0226 + 1795120-1795686,1796040-1796171                           55   7e-08
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540...    28   7.2  
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    28   7.2  

>04_04_0791 +
           28088237-28088809,28089311-28089430,28089585-28089662,
           28089808-28089938,28090390-28090435,28090529-28090636
          Length = 351

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
 Frame = +1

Query: 505 SKTVDEALAILS--DKP---EVDRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXX 669
           +++VDEA+A +S  D       D+HPE+RLKA+F AFE+  LP+LK   P          
Sbjct: 157 ARSVDEAIARMSLVDSEGALPADKHPERRLKASFKAFEEAELPKLKEEKPGLTLNQYKDM 216

Query: 670 XXXXWHKSPQNPLNQ 714
               W KSP NPLNQ
Sbjct: 217 IWKLWKKSPDNPLNQ 231



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 90  MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 212
           MPKK  G NSKA AAR+R+  A+ ++  + ++A E+  W +
Sbjct: 1   MPKKM-GVNSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40


>03_01_0226 + 1795120-1795686,1796040-1796171
          Length = 232

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = +1

Query: 505 SKTVDEALAILSDKPEV----DRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXX 672
           +++V++A+  +S   E     DRHPE+RLK ++ AFE+  L +LK   P           
Sbjct: 156 ARSVEDAIVKMSIAAEPALPPDRHPERRLKVSYKAFEEAELAKLKEEKPGLTLHQYKDMI 215

Query: 673 XXXWHKSPQNPLNQ 714
              W KSP NPLNQ
Sbjct: 216 WKLWKKSPDNPLNQ 229



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 90  MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 209
           MPKK  G N+KA AAR+R+  A+ ++  +  +A E+A W+
Sbjct: 1   MPKKM-GVNTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39


>10_08_0583 -
           18952168-18952263,18953663-18953740,18954006-18954081,
           18954687-18954735,18955271-18955469,18955761-18955799,
           18955800-18956123
          Length = 286

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 553 VDRHPEKRLK--AAFTAFEQINLPRLKAGNP 639
           ++R PEKR +  +A+  F +  + R+KAGNP
Sbjct: 185 INRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 215


>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +2

Query: 383 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELARLLMKLSRYSVISRK*ID 562
           + + KEKM +P T++P     + E    +++    Q+   LA++ +++ +   +    + 
Sbjct: 198 VRKEKEKMKQPSTSEPAERTAIAEAVDDDDDDELEQIRERLAKISLRMLQQPTMKHWQVF 257

Query: 563 ILKNDLKQPSQPLNKSICH 619
           IL  +L   S    K I H
Sbjct: 258 ILFFELFTASVCFGKRIKH 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,680
Number of Sequences: 37544
Number of extensions: 250399
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)