Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20834
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18)                71   8e-13
SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)                46   3e-05
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    35   0.084
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)                 33   0.25 
SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)                      29   4.2  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_21151| Best HMM Match : AAA_2 (HMM E-Value=0)                       28   7.3  
SB_14909| Best HMM Match : Spb1_C (HMM E-Value=0)                      28   7.3  
SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3)                    28   9.6  
SB_720| Best HMM Match : DUF234 (HMM E-Value=5.3)                      28   9.6  
SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)                    28   9.6  
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)                   28   9.6  

>SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18)
          Length = 170

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 32/69 (46%), Positives = 45/69 (65%)
 Frame = +1

Query: 505 SKTVDEALAILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXXXW 684
           +++V+EA+A LS + ++++HPEKRLKAA+  FE+  LPRLK  NP              W
Sbjct: 92  ARSVEEAIATLSVEQKIEKHPEKRLKAAYAEFEERELPRLKQENPNLRLSQLKQMLRKDW 151

Query: 685 HKSPQNPLN 711
            KSP+NPLN
Sbjct: 152 MKSPENPLN 160


>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
          Length = 265

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = +3

Query: 90  MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDND 218
           MPKKF G NSKA  AR RK + K  + ++ ++  ED  WED+D
Sbjct: 25  MPKKFKGVNSKAEEARARKASNKSAEKERKEREEEDKLWEDDD 67



 Score = 31.5 bits (68), Expect = 0.78
 Identities = 11/25 (44%), Positives = 22/25 (88%)
 Frame = +1

Query: 505 SKTVDEALAILSDKPEVDRHPEKRL 579
           +++V+EA+A LS + ++++HPEKR+
Sbjct: 161 ARSVEEAIATLSVEQKIEKHPEKRV 185


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 34.7 bits (76), Expect = 0.084
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 66   RTSQYLHKMPKKFTGENSKAVAARQ-RKENAKLEKDQKTKKAVEDAE 203
            +T ++  K  K+F    S+A A R+  KEN K E+ QKTKK   DA+
Sbjct: 1241 KTDRWSLKRTKRFQNTKSEARAERKWLKENIKQEQYQKTKKKFPDAQ 1287


>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
          Length = 443

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/36 (36%), Positives = 26/36 (72%)
 Frame = +2

Query: 380 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRI 487
           Q++Q+++ MA+P +A+P P K+  ++  LE+ + RI
Sbjct: 352 QVAQSRQ-MARPSSARPAPPKIKKQQDELEDQVGRI 386


>SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)
          Length = 325

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 87  KMPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 215
           K+ K+F     K  A   +KE  + E D++ KK + DA  E N
Sbjct: 188 KLAKEFQKNKKKYAAEIDKKEKERKEIDKQIKKIIADAIAEAN 230


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 87  KMPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDNDD 221
           K  KK + E+ K  A +QRK   K  K+ K     E+   E+ DD
Sbjct: 791 KKGKKDSSESEKGKAKKQRKGREKKGKEIKKNDDEEEERDEEEDD 835


>SB_21151| Best HMM Match : AAA_2 (HMM E-Value=0)
          Length = 373

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +3

Query: 45  ISFYLVPRTSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKT-KKAVEDA--EWEDN 215
           I+  +VP+    L    +      +KAV+ ++ +E AKL  D+K  + A+E A  +WE++
Sbjct: 106 ITNIVVPQQVLALEAELENIRANKNKAVSGQKYEEAAKLRDDEKNMEAALESAQKQWEED 165


>SB_14909| Best HMM Match : Spb1_C (HMM E-Value=0)
          Length = 437

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDNDD 221
           E    V+ +   E+AK  K  +TKK  ++ + +D+DD
Sbjct: 169 EEKAGVSEKPMPESAKTTKPTRTKKQTDNEDDDDDDD 205


>SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3)
          Length = 242

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 15  FHNLHF-TH*LISFYLVPRTSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTKKA 188
           FH + F TH L +  LV    +Y HK   +F G  ++ + A   +E  KLEK +  K A
Sbjct: 61  FHGVTFATHLLTTIALVTPNWEY-HK---RFEGLEAEEIEALSLQEYKKLEKKRAKKNA 115


>SB_720| Best HMM Match : DUF234 (HMM E-Value=5.3)
          Length = 227

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 15  FHNLHF-TH*LISFYLVPRTSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTKKA 188
           FH + F TH L +  LV    +Y HK   +F G  ++ + A   +E  KLEK +  K A
Sbjct: 61  FHGVTFATHLLTTIALVTPNWEY-HK---RFEGLEAEEIEALSLQEYKKLEKKRAKKNA 115


>SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)
          Length = 268

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 395 KEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELA-RLLMKLSR 532
           K     PET+  +P   + +E P+E  L R  L  +L+   ++K+SR
Sbjct: 174 KASPKNPETSTSLPPLTMSQEEPIERRLKRKHLSKQLSFPEMLKVSR 220


>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
          Length = 906

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 90  MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 212
           +P + T   S +  A Q  +  K  +D +TKKAV+D + E+
Sbjct: 526 IPSETTKPESLSEIAMQDTQTKKAVQDTQTKKAVQDIQAEN 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,751,850
Number of Sequences: 59808
Number of extensions: 296323
Number of successful extensions: 1140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)