Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20834
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical ... 67 1e-11
AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 67 1e-11
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 29 3.7
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 4.8
Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 28 6.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.4
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 28 8.5
Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical p... 28 8.5
Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 28 8.5
Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 28 8.5
Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical p... 28 8.5
Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 28 8.5
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 28 8.5
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 28 8.5
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 28 8.5
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 28 8.5
>AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical
protein Y73E7A.1b protein.
Length = 146
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +1
Query: 505 SKTVDEALAILSDKPEVD--RHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXX 678
++ VD+AL +L ++ +D +HPEKR++AA+ AFE+ LP LK +P
Sbjct: 68 ARNVDDALKVLGEEKALDDDKHPEKRMRAAYLAFEEARLPELKLNHPTFRLSQLKQILKK 127
Query: 679 XWHKSPQNPLNQRV 720
W KSP+NPLN R+
Sbjct: 128 EWQKSPENPLNARL 141
>AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical
protein Y73E7A.1a protein.
Length = 223
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +1
Query: 505 SKTVDEALAILSDKPEVD--RHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXX 678
++ VD+AL +L ++ +D +HPEKR++AA+ AFE+ LP LK +P
Sbjct: 145 ARNVDDALKVLGEEKALDDDKHPEKRMRAAYLAFEEARLPELKLNHPTFRLSQLKQILKK 204
Query: 679 XWHKSPQNPLNQRV 720
W KSP+NPLN R+
Sbjct: 205 EWQKSPENPLNARL 218
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = +3
Query: 90 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDND 218
MPKKF EN K AAR RK AK ++ K KA EDA+W DND
Sbjct: 1 MPKKFASENPKVTAARDRKATAKKDEADKKAKATEDAKWVDND 43
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 63 PRTSQYLHKMPKKFTGENSKAVAARQ-RKENAKLEKDQKTKKAVEDAEWEDNDD 221
P TS+ T E S + + +KE+ K +KD+K KK ++ ED+DD
Sbjct: 273 PETSEEPQSSESTPTSEESTEQSTEKPKKEDKKDKKDKKDKKQKKEDSEEDDDD 326
>Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical
protein C17D12.7 protein.
Length = 657
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 469 RKSKQDTVRW*ISKTVDEALAILSDKPEV--DRHPEKRLKAAFTAFEQ 606
+KSK+ + I KT D L+ILS+K E+ ++H K A A E+
Sbjct: 62 KKSKKKKIPSPIKKTNDTKLSILSEKSEIRSEKHKNKCKSADLDAMEK 109
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 135 RQRKENAKLEKDQKTKKAVEDAEWEDNDD 221
++RKE +LEK+ + K +D + +D DD
Sbjct: 171 KERKEKKRLEKENRKIKEEDDEDSDDEDD 199
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 153 AKLEKDQKTKKAVEDAEWEDNDD 221
AK +K+QK KKA D +WE+++D
Sbjct: 239 AKAQKEQK-KKAESDEDWEEDED 260
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 153 AKLEKDQKTKKAVEDAEWEDNDD 221
AK +K+QK KKA D +WE+++D
Sbjct: 239 AKAQKEQK-KKAESDEDWEEDED 260
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 135 RQRKENAKLEKDQKTKKAVEDAEWEDNDD 221
++RKE +LEK+ + K +D + +D DD
Sbjct: 171 KKRKEKKRLEKENRKIKEEDDEDSDDEDD 199
>Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical
protein C40C9.4 protein.
Length = 71
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 90 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 212
MP FT + +V Q +EN +L +QK K V+ +ED
Sbjct: 1 MPPFFTEKLQGSVEELQNQENEELTIEQKKKAGVDQNYFED 41
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 383 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAR 511
++Q + + + E AKP + +EPP E +I L G+L +
Sbjct: 584 VTQPEMEPSSSEPAKPAKPSITKKEPPSETMSAKISLIGDLQK 626
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 117 SKAVAARQRKENAKLEKDQKTKKAVED 197
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 117 SKAVAARQRKENAKLEKDQKTKKAVED 197
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 117 SKAVAARQRKENAKLEKDQKTKKAVED 197
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVED 197
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical
protein F49E2.5i protein.
Length = 1030
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVED 197
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical
protein F49E2.5g protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVED 197
+ S AV + RK+N K +K +++KAVE+
Sbjct: 397 DESTAVTSENRKKNKKDKKKSESEKAVEE 425
>Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical
protein F49E2.5f protein.
Length = 611
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVED 197
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical
protein F49E2.5e protein.
Length = 581
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVED 197
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical
protein F49E2.5a protein.
Length = 1215
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 111 ENSKAVAARQRKENAKLEKDQKTKKAVED 197
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 556 DRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXXXWHKSPQ 699
D H KR +AF + Q P ++AG+P W PQ
Sbjct: 130 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 177
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 556 DRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXXXWHKSPQ 699
D H KR +AF + Q P ++AG+P W PQ
Sbjct: 129 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 176
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 556 DRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXXXWHKSPQ 699
D H KR +AF + Q P ++AG+P W PQ
Sbjct: 131 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 178
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 556 DRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXXXWHKSPQ 699
D H KR +AF + Q P ++AG+P W PQ
Sbjct: 131 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,385
Number of Sequences: 27780
Number of extensions: 228198
Number of successful extensions: 934
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -