Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20834
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 639 FAQASQLKGTAKERMAQITTEPPQ 710
           F QAS L G  ++ +  +  EPPQ
Sbjct: 886 FCQASNLYGRDQQLVQLLVQEPPQ 909


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 639 FAQASQLKGTAKERMAQITTEPPQ 710
           F QAS L G  ++ +  +  EPPQ
Sbjct: 882 FCQASNLYGRDQQLVQLLVQEPPQ 905


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 437 SKVVIEEPPLEENLNRIQLDGELARLLMK 523
           + + ++EPPL +NLN + L   L   L K
Sbjct: 239 ANISLDEPPLGKNLN-LSLHASLNHTLTK 266


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 597 GCEGCFKSFFRMSIYFRLITEYRESFINSLANSPSN 490
           GC   F +     +Y  +  +YR +F  +   SPSN
Sbjct: 302 GCLYYFSTTINPILYNVMSAKYRNAFKETCRCSPSN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,590
Number of Sequences: 438
Number of extensions: 2519
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)