Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20834
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb...    75   4e-14
At2g21800.1 68415.m02591 expressed protein                             31   0.64 
At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor...    31   0.84 
At3g48070.1 68416.m05241 expressed protein                             31   1.1  
At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic...    29   2.6  
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...    29   4.5  
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    28   5.9  
At5g16340.1 68418.m01910 AMP-binding protein, putative similar t...    28   7.9  

>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
           gb|AA595092 come from this gene
          Length = 234

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 38/70 (54%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
 Frame = +1

Query: 511 TVDEALA--ILSDKPEVDRHPEKRLKAAFTAFEQINLPRLKAGNPXXXXXXXXXXXXXXW 684
           TVDEALA   +SD   VDRHPEKRLKA+F A+E++ LPRLK+  P              W
Sbjct: 157 TVDEALARITVSDNLPVDRHPEKRLKASFKAYEEVELPRLKSEKPGLTHTQYKDLIWKMW 216

Query: 685 HKSPQNPLNQ 714
            KSP NPLNQ
Sbjct: 217 KKSPDNPLNQ 226



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 90  MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 212
           MPKK  G NSKA  A+ RK  A+ E+  +  +  E+  W +
Sbjct: 1   MPKKM-GLNSKAEVAKSRKNAAEAEQKDRQTREKEEQYWRE 40


>At2g21800.1 68415.m02591 expressed protein
          Length = 475

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 69  TSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAE 203
           TS     +PKK   ++ K  AA ++K   + EK QK     EDAE
Sbjct: 179 TSLSADSLPKKKMSKDEKTRAAEEKKLQKEQEKLQKAASKAEDAE 223


>At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal
           floral organs protein (AFO) / filamentous flower protein
           (FIL) identical to YABBY1 [Arabidopsis thaliana]
           GI:4928749, abnormal floral organs protein (AFO)
           [Arabidopsis thaliana] GI:4322477; supporting cDNA
           gi|4322476|gb|AF087015.1|AF087015
          Length = 229

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 547 PEVDRHPEKRLK--AAFTAFEQINLPRLKAGNP 639
           P V+R PEKR +  +A+  F +  + R+KAGNP
Sbjct: 132 PPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNP 164


>At3g48070.1 68416.m05241 expressed protein
          Length = 319

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -1

Query: 540 TEYRESFINSLANSPSNCILFRFSSKGGSSMTTFEGTGLAVSG 412
           T   ESFI SL+NSP N IL   +S    S ++  G+G + SG
Sbjct: 89  THRHESFIESLSNSP-NSILSGMNSIPNFSSSSSSGSGGSCSG 130


>At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical
           to YABBY3 [Arabidopsis thaliana] GI:4928753
          Length = 240

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 547 PEVDRHPEKRLK--AAFTAFEQINLPRLKAGNP 639
           P  +R PEKR +  +A+  F +  + R+KAGNP
Sbjct: 144 PPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNP 176


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 87  KMPKKFTGENSKAV-AARQRKENAKLEKDQKTKKAVEDAEWEDNDD 221
           K  +K +  NSKA+ A RQ+ +   L+  +  K+  E  E ED+D+
Sbjct: 115 KTKEKMSTSNSKALNAMRQKLKKNNLQYQEDIKRFRESPEIEDDDE 160


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
            region is similar to C-term region of kinesin motor
            protein GB:AAB51397 (Mus musculus); contains Pfam
            profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +2

Query: 383  ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELARLLMKLSRYSVISRK*ID 562
            IS A E    PETAKP+    +IE P       +++   ++ +   K SR ++ S+    
Sbjct: 964  ISSAVELTLFPETAKPLE---LIERPEARMTSEKLEKSVKMGKTEPKDSRTNIPSK---- 1016

Query: 563  ILKNDLKQPSQ 595
            I K  LK P Q
Sbjct: 1017 IPKQTLKPPGQ 1027


>At5g16340.1 68418.m01910 AMP-binding protein, putative similar to
           AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           adenosine monophosphate binding protein 6 AMPBP6
           (AMPBP6) GI:20799720
          Length = 550

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 54  YLVPRTSQYLHKMPKKFTGENSKAV 128
           Y+VP+T  ++ ++PK  TG+ +K V
Sbjct: 512 YMVPKTVSFMDELPKSSTGKVTKFV 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,593,961
Number of Sequences: 28952
Number of extensions: 214075
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)