Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20831
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        26   0.29 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.51 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.3  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   8.3  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 206 SHTPFPLHPVY-SLLFLTLNYVQVTNTIEINKHFTNSS 316
           +H P+P H +Y S   + LN +Q  +   IN   TN +
Sbjct: 343 AHNPYPSHSIYPSSNLMPLNNIQNLSQSGINYKDTNDN 380


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 439 FMM*LYLFYMKNEIIKMSLLFSLLPLHIKCFIFIY 543
           F++ +Y FY    I  + LLF L   H  C   I+
Sbjct: 142 FLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIF 176



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 439 FMM*LYLFYMKNEIIKMSLLFSLLPLHIKCFIFIY 543
           F+  +Y FY    I  + LLF  + + + C  + Y
Sbjct: 208 FLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFY 242


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 205 KPYPVPFAPCIQPVIPYT 258
           +PYPVPFA  ++P +  T
Sbjct: 309 RPYPVPFA--LRPAVDAT 324


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 16  SRQLQSFLLLGYCTVKL*LRSQVLRYVAEFTLLMSMGSDDRLTPS 150
           S+ +  + LLG+  ++L +       +AE T L+++  D    PS
Sbjct: 699 SQVMYMYYLLGHRLMELPISVDRKAVIAENTYLLTLDGDIDFQPS 743


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 16  SRQLQSFLLLGYCTVKL*LRSQVLRYVAEFTLLMSMGSDDRLTPS 150
           S+ +  + LLG+  ++L +       +AE T L+++  D    PS
Sbjct: 699 SQVMYMYYLLGHRLMELPISVDRKAVIAENTYLLTLDGDIDFQPS 743


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 16  SRQLQSFLLLGYCTVKL*LRSQVLRYVAEFTLLMSMGSDDRLTPS 150
           S+ +  + LLG+  ++L +       +AE T L+++  D    PS
Sbjct: 699 SQVMYMYYLLGHRLMELPISVDRKAVIAENTYLLTLDGDIDFQPS 743


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 16  SRQLQSFLLLGYCTVKL*LRSQVLRYVAEFTLLMSMGSDDRLTPS 150
           S+ +  + LLG+  ++L +       +AE T L+++  D    PS
Sbjct: 699 SQVMYMYYLLGHRLMELPISVDRKAVIAENTYLLTLDGDIDFQPS 743


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 112 LMSMGSDDRLTPSGR 156
           L S GSD R TPS R
Sbjct: 409 LPSPGSDQRSTPSPR 423


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 227 HPVYSLLFLTLNYVQVTNTIEINKHF 304
           +PV ++ F  LN+      I I+KH+
Sbjct: 114 YPVATMSFYVLNFFGSIQFIIISKHW 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,686
Number of Sequences: 336
Number of extensions: 2735
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)