Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20831
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   3.8  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   5.0  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   8.8  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 111 VDVHGLR*PLNTKWSVSSS 167
           +DVH  R P N KWS S +
Sbjct: 74  IDVHNERDPANIKWSASGA 92


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 27  TIISIVRLLYCKTVT*ISGLKVRCGIYVVDVHGLR*PLNTKWSVSSS 167
           T+I I + +   ++  I G+ V  G+YV  V  L  P++  W VS S
Sbjct: 72  TLIWIYKYIEPHSLISIPGIFVFLGLYVPFVVTLLIPIDVTWDVSLS 118


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 203 RSHTPFPLHPVYSLLFLTLNYVQVTNTIEI----NKHFTNSSL*AYLDSQSIE 349
           RS +P P +P+ S  F   N   VT+  EI    +K   ++SL  + DS+ ++
Sbjct: 591 RSKSPTPYYPIESSEFGFTNLKDVTSKDEITDGFDKALRSNSLRTHRDSRPVQ 643


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 141 NTKWSVSSSTT*AIKIVGIKVEAIPRSLCTLYTACYSLHSIMYKLP 278
           N+  SVS   T  + ++G     + + LC L T+ Y  H+ +  LP
Sbjct: 163 NSLGSVSPLVTKLLDVIGFGASLLDKYLCDLRTS-YHKHNSLDALP 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,259
Number of Sequences: 5004
Number of extensions: 42982
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)